SNP Links for Gene (Select 105374791) - SNP

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Select item 14913740681.

rs1491374068 has merged into rs58528348 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 2:68835723 (GRCh38)
2:69062855 (GRCh37)
Canonical SPDI:: NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:68835712:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01890 (Varview), LINC01888 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
AAAAAAAAAAAAA=0.2933/1469 (1000Genomes)
HGVS:: NC_000002.12:g.68835723_68835737del, NC_000002.12:g.68835724_68835737del, NC_000002.12:g.68835725_68835737del, NC_000002.12:g.68835726_68835737del, NC_000002.12:g.68835727_68835737del, NC_000002.12:g.68835728_68835737del, NC_000002.12:g.68835729_68835737del, NC_000002.12:g.68835730_68835737del, NC_000002.12:g.68835731_68835737del, NC_000002.12:g.68835732_68835737del, NC_000002.12:g.68835733_68835737del, NC_000002.12:g.68835734_68835737del, NC_000002.12:g.68835735_68835737del, NC_000002.12:g.68835736_68835737del, NC_000002.12:g.68835737del, NC_000002.12:g.68835737dup, NC_000002.12:g.68835736_68835737dup, NC_000002.12:g.68835735_68835737dup, NC_000002.12:g.68835734_68835737dup, NC_000002.12:g.68835733_68835737dup, NC_000002.12:g.68835732_68835737dup, NC_000002.12:g.68835731_68835737dup, NC_000002.12:g.68835729_68835737dup, NC_000002.12:g.68835728_68835737dup, NC_000002.12:g.68835727_68835737dup, NC_000002.11:g.69062855_69062869del, NC_000002.11:g.69062856_69062869del, NC_000002.11:g.69062857_69062869del, NC_000002.11:g.69062858_69062869del, NC_000002.11:g.69062859_69062869del, NC_000002.11:g.69062860_69062869del, NC_000002.11:g.69062861_69062869del, NC_000002.11:g.69062862_69062869del, NC_000002.11:g.69062863_69062869del, NC_000002.11:g.69062864_69062869del, NC_000002.11:g.69062865_69062869del, NC_000002.11:g.69062866_69062869del, NC_000002.11:g.69062867_69062869del, NC_000002.11:g.69062868_69062869del, NC_000002.11:g.69062869del, NC_000002.11:g.69062869dup, NC_000002.11:g.69062868_69062869dup, NC_000002.11:g.69062867_69062869dup, NC_000002.11:g.69062866_69062869dup, NC_000002.11:g.69062865_69062869dup, NC_000002.11:g.69062864_69062869dup, NC_000002.11:g.69062863_69062869dup, NC_000002.11:g.69062861_69062869dup, NC_000002.11:g.69062860_69062869dup, NC_000002.11:g.69062859_69062869dup

Select item 14911916152.

rs1491191615 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 2:68835712 (GRCh38)
2:69062844 (GRCh37)
Canonical SPDI:: NC_000002.12:68835711:CA:
Gene:: LINC01890 (Varview), LINC01888 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00008/1 (ALFA)
-=0.00002/1 (GnomAD)
-=0.00004/1 (TOMMO)
-=0.00397/7 (Korea1K)
HGVS:: NC_000002.12:g.68835712_68835713del, NC_000002.11:g.69062844_69062845del

Select item 14909791423.

rs1490979142 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:68830480 (GRCh38)
2:69057612 (GRCh37)
Canonical SPDI:: NC_000002.12:68830479:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.68830480T>C, NC_000002.11:g.69057612T>C

Select item 14906791664.

rs1490679166 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:68831366 (GRCh38)
2:69058498 (GRCh37)
Canonical SPDI:: NC_000002.12:68831365:A:C,NC_000002.12:68831365:A:G
Gene:: LINC01890 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.68831366A>C, NC_000002.12:g.68831366A>G, NC_000002.11:g.69058498A>C, NC_000002.11:g.69058498A>G, XR_940226.4:n.1156T>G, XR_940226.4:n.1156T>C, XR_940226.3:n.1337T>G, XR_940226.3:n.1337T>C, XR_940226.2:n.1156T>G, XR_940226.2:n.1156T>C, XR_940226.1:n.1156T>G, XR_940226.1:n.1156T>C

Select item 14902113685.

rs1490211368 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:68834029 (GRCh38)
2:69061161 (GRCh37)
Canonical SPDI:: NC_000002.12:68834028:A:T
Gene:: LINC01890 (Varview), LINC01888 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
HGVS:: NC_000002.12:g.68834029A>T, NC_000002.11:g.69061161A>T

Select item 14899258496.

rs1489925849 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:68838862 (GRCh38)
2:69065994 (GRCh37)
Canonical SPDI:: NC_000002.12:68838861:T:C
Gene:: LINC01890 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.68838862T>C, NC_000002.11:g.69065994T>C

Select item 14898786187.

rs1489878618 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:68838490 (GRCh38)
2:69065622 (GRCh37)
Canonical SPDI:: NC_000002.12:68838489:G:T
Gene:: LINC01890 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000022/3 (GnomAD)
HGVS:: NC_000002.12:g.68838490G>T, NC_000002.11:g.69065622G>T

Select item 14896519218.

rs1489651921 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:68831128 (GRCh38)
2:69058260 (GRCh37)
Canonical SPDI:: NC_000002.12:68831127:C:T
Gene:: LINC01890 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000002.12:g.68831128C>T, NC_000002.11:g.69058260C>T

Select item 14889612159.

rs1488961215 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:68833212 (GRCh38)
2:69060344 (GRCh37)
Canonical SPDI:: NC_000002.12:68833211:A:G
Gene:: LINC01890 (Varview), LINC01888 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.68833212A>G, NC_000002.11:g.69060344A>G

Select item 148870469210.

rs1488704692 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:68836052 (GRCh38)
2:69063184 (GRCh37)
Canonical SPDI:: NC_000002.12:68836051:A:C
Gene:: LINC01890 (Varview), LINC01888 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.68836052A>C, NC_000002.11:g.69063184A>C

Select item 148856360511.

rs1488563605 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:68837502 (GRCh38)
2:69064634 (GRCh37)
Canonical SPDI:: NC_000002.12:68837501:C:T
Gene:: LINC01890 (Varview), LINC01888 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.68837502C>T, NC_000002.11:g.69064634C>T, XR_001739530.2:n.435C>T, XR_001739530.1:n.982C>T

Select item 148853206512.

rs1488532065 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:68836541 (GRCh38)
2:69063673 (GRCh37)
Canonical SPDI:: NC_000002.12:68836540:C:A
Gene:: LINC01890 (Varview), LINC01888 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.68836541C>A, NC_000002.11:g.69063673C>A, XR_940226.4:n.667G>T, XR_940226.3:n.848G>T, XR_940226.2:n.667G>T, XR_940226.1:n.667G>T, XR_001739529.3:n.667G>T, XR_001739529.2:n.848G>T, XR_001739529.1:n.667G>T

Select item 148834204113.

rs1488342041 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 2:68827336 (GRCh38)
2:69054468 (GRCh37)
Canonical SPDI:: NC_000002.12:68827335:T:A,NC_000002.12:68827335:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.00003/8 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000002.12:g.68827336T>A, NC_000002.12:g.68827336T>C, NC_000002.11:g.69054468T>A, NC_000002.11:g.69054468T>C

Select item 148822427814.

rs1488224278 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:68838886 (GRCh38)
2:69066018 (GRCh37)
Canonical SPDI:: NC_000002.12:68838885:A:C
Gene:: LINC01890 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.68838886A>C, NC_000002.11:g.69066018A>C

Select item 148813460515.

rs1488134605 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:68827207 (GRCh38)
2:69054339 (GRCh37)
Canonical SPDI:: NC_000002.12:68827206:T:C
Gene:: ARHGAP25 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.68827207T>C, NC_000002.11:g.69054339T>C

Select item 148811812416.

rs1488118124 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 2:68838234 (GRCh38)
2:69065366 (GRCh37)
Canonical SPDI:: NC_000002.12:68838233:A:G,NC_000002.12:68838233:A:T
Gene:: LINC01890 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.68838234A>G, NC_000002.12:g.68838234A>T, NC_000002.11:g.69065366A>G, NC_000002.11:g.69065366A>T

Select item 148792880417.

rs1487928804 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:68838462 (GRCh38)
2:69065594 (GRCh37)
Canonical SPDI:: NC_000002.12:68838461:C:A
Gene:: LINC01890 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000008/1 (GnomAD)
HGVS:: NC_000002.12:g.68838462C>A, NC_000002.11:g.69065594C>A

Select item 148791509918.

rs1487915099 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 2:68829928 (GRCh38)
2:69057060 (GRCh37)
Canonical SPDI:: NC_000002.12:68829927:G:C,NC_000002.12:68829927:G:T
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.68829928G>C, NC_000002.12:g.68829928G>T, NC_000002.11:g.69057060G>C, NC_000002.11:g.69057060G>T

Select item 148690377119.

rs1486903771 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:68827358 (GRCh38)
2:69054490 (GRCh37)
Canonical SPDI:: NC_000002.12:68827357:A:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.68827358A>C, NC_000002.11:g.69054490A>C

Select item 148619116120.

rs1486191161 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:68826446 (GRCh38)
2:69053578 (GRCh37)
Canonical SPDI:: NC_000002.12:68826445:C:T
Gene:: ARHGAP25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.68826446C>T, NC_000002.11:g.69053578C>T, XM_011533207.4:c.*252C>T, XM_011533207.3:c.*252C>T, XM_011533207.2:c.*252C>T, XM_011533207.1:c.*252C>T, XM_011533210.4:c.*252C>T, XM_011533210.3:c.*252C>T, XM_011533210.2:c.*252C>T, XM_011533210.1:c.*252C>T, XM_011533209.3:c.*252C>T, XM_011533209.2:c.*252C>T, XM_011533209.1:c.*252C>T, NM_001007231.3:c.*252C>T, NM_001007231.2:c.*252C>T, NM_014882.3:c.*252C>T, NM_014882.2:c.*252C>T, NM_001166277.2:c.*252C>T, NM_001166277.1:c.*252C>T, NM_001166276.2:c.*252C>T, NM_001166276.1:c.*252C>T, XM_017005426.2:c.*252C>T, XM_017005426.1:c.*252C>T, NM_001364819.1:c.*252C>T, NM_001364820.1:c.*252C>T, NM_001364821.1:c.*252C>T

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