SNP Links for Gene (Select 105373518) - SNP

Links from Gene

Items: 1 to 20 of 5966

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Select item 14914618781.

rs1491461878 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->C
Chromosome:: no mapping
Canonical SPDI:

Select item 14912878082.

rs1491287808 has merged into rs533748236 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTGTGT>-,GT,GTGT,GTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT [Show Flanks]
Chromosome:: 2:102884809 (GRCh38)
2:103501268 (GRCh37)
Canonical SPDI:: NC_000002.12:102884795:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGT,NC_000002.12:102884795:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000002.12:102884795:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGT,NC_000002.12:102884795:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGT,NC_000002.12:102884795:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:102884795:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:102884795:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGT
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGTGT=0./0 (ALFA)
TG=0.00502/3 (NorthernSweden)
TG=0.01018/51 (1000Genomes)
-=0.025/1 (GENOME_DK)
TG=0.03241/7 (Vietnamese)
HGVS:: NC_000002.12:g.102884797GT[6], NC_000002.12:g.102884797GT[7], NC_000002.12:g.102884797GT[8], NC_000002.12:g.102884797GT[9], NC_000002.12:g.102884797GT[11], NC_000002.12:g.102884797GT[12], NC_000002.12:g.102884797GT[13], NC_000002.11:g.103501256GT[6], NC_000002.11:g.103501256GT[7], NC_000002.11:g.103501256GT[8], NC_000002.11:g.103501256GT[9], NC_000002.11:g.103501256GT[11], NC_000002.11:g.103501256GT[12], NC_000002.11:g.103501256GT[13]

Select item 14912867503.

rs1491286750 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 2:102884795 (GRCh38)
2:103501254 (GRCh37)
Canonical SPDI:: NC_000002.12:102884794:AT:
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.0076/28 (TWINSUK)
-=0.0096/37 (ALSPAC)
HGVS:: NC_000002.12:g.102884795_102884796del, NC_000002.11:g.103501254_103501255del

Select item 14910984854.

rs1491098485 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 2:102886839 (GRCh38)
2:103503298 (GRCh37)
Canonical SPDI:: NC_000002.12:102886837:TCT:T
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.102886839_102886840del, NC_000002.11:g.103503298_103503299del

Select item 14908585915.

rs1490858591 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:102874389 (GRCh38)
2:103490848 (GRCh37)
Canonical SPDI:: NC_000002.12:102874388:T:C
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.102874389T>C, NC_000002.11:g.103490848T>C

Select item 14906903846.

rs1490690384 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:102894766 (GRCh38)
2:103511225 (GRCh37)
Canonical SPDI:: NC_000002.12:102894765:G:T
Gene:: LINC01796 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.102894766G>T, NC_000002.11:g.103511225G>T, NR_135562.1:n.102C>A

Select item 14906887097.

rs1490688709 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:102880874 (GRCh38)
2:103497333 (GRCh37)
Canonical SPDI:: NC_000002.12:102880873:T:A
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.102880874T>A, NC_000002.11:g.103497333T>A

Select item 14905873768.

rs1490587376 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 2:102874421 (GRCh38)
2:103490880 (GRCh37)
Canonical SPDI:: NC_000002.12:102874420:T:A,NC_000002.12:102874420:T:C
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.102874421T>A, NC_000002.12:g.102874421T>C, NC_000002.11:g.103490880T>A, NC_000002.11:g.103490880T>C

Select item 14905033559.

rs1490503355 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 149021844010.

rs1490218440 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 2:102885857 (GRCh38)
2:103502316 (GRCh37)
Canonical SPDI:: NC_000002.12:102885856:A:
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.102885857del, NC_000002.11:g.103502316del

Select item 149017468511.

rs1490174685 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:102885064 (GRCh38)
2:103501523 (GRCh37)
Canonical SPDI:: NC_000002.12:102885063:T:C
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.102885064T>C, NC_000002.11:g.103501523T>C

Select item 149014929312.

rs1490149293 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTATTA>- [Show Flanks]
Chromosome:: 2:102882563 (GRCh38)
2:103499022 (GRCh37)
Canonical SPDI:: NC_000002.12:102882558:ATTACTTATTA:ATTA
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATTA=0./0 (ALFA)
-=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.102882563_102882569del, NC_000002.11:g.103499022_103499028del

Select item 148987487913.

rs1489874879 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:102894241 (GRCh38)
2:103510700 (GRCh37)
Canonical SPDI:: NC_000002.12:102894240:C:G,NC_000002.12:102894240:C:T
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0./0 (GnomAD)
HGVS:: NC_000002.12:g.102894241C>G, NC_000002.12:g.102894241C>T, NC_000002.11:g.103510700C>G, NC_000002.11:g.103510700C>T

Select item 148983344114.

rs1489833441 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:102886838 (GRCh38)
2:103503297 (GRCh37)
Canonical SPDI:: NC_000002.12:102886837:T:C
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.102886838T>C, NC_000002.11:g.103503297T>C

Select item 148980233015.

rs1489802330 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:102887609 (GRCh38)
2:103504068 (GRCh37)
Canonical SPDI:: NC_000002.12:102887608:T:C
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000002.12:g.102887609T>C, NC_000002.11:g.103504068T>C

Select item 148974215816.

rs1489742158 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:102874095 (GRCh38)
2:103490554 (GRCh37)
Canonical SPDI:: NC_000002.12:102874094:T:A
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.102874095T>A, NC_000002.11:g.103490554T>A

Select item 148969207717.

rs1489692077 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 2:102874902 (GRCh38)
2:103491362 (GRCh37)
Canonical SPDI:: NC_000002.12:102874902:TT:TTT
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.102874904dup, NC_000002.11:g.103491363dup

Select item 148956497418.

rs1489564974 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:102888746 (GRCh38)
2:103505205 (GRCh37)
Canonical SPDI:: NC_000002.12:102888745:T:G
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.102888746T>G, NC_000002.11:g.103505205T>G

Select item 148947628419.

rs1489476284 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:102889109 (GRCh38)
2:103505568 (GRCh37)
Canonical SPDI:: NC_000002.12:102889108:A:G
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000043/6 (GnomAD)
G=0.000083/22 (TOPMED)
HGVS:: NC_000002.12:g.102889109A>G, NC_000002.11:g.103505568A>G

Select item 148944047220.

rs1489440472 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:102876584 (GRCh38)
2:103493043 (GRCh37)
Canonical SPDI:: NC_000002.12:102876583:T:C
Gene:: LINC01796 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.102876584T>C, NC_000002.11:g.103493043T>C

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