SNP Links for Gene (Select 105373414) - SNP

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Select item 14900300781.

rs1490030078 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:9105978 (GRCh38)
2:9246107 (GRCh37)
Canonical SPDI:: NC_000002.12:9105977:C:T
Gene:: LOC105373414 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.9105978C>T, NC_000002.11:g.9246107C>T, XR_922767.2:n.2866C>T, XR_922767.1:n.1411C>T, XR_922769.2:n.2591C>T, XR_922769.1:n.1437C>T, XR_007086201.1:n.1064C>T

Select item 14896191622.

rs1489619162 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:9104555 (GRCh38)
2:9244684 (GRCh37)
Canonical SPDI:: NC_000002.12:9104554:A:G
Gene:: LOC105373414 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.9104555A>G, NC_000002.11:g.9244684A>G, NG_082453.1:g.202A>G, XR_922767.2:n.1852A>G, XR_922767.1:n.397A>G, XR_922769.2:n.1577A>G, XR_922769.1:n.423A>G, XR_007086201.1:n.367A>G

Select item 14887772313.

rs1488777231 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:9101454 (GRCh38)
2:9241583 (GRCh37)
Canonical SPDI:: NC_000002.12:9101453:G:A,NC_000002.12:9101453:G:T
Gene:: LOC105373414 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.9101454G>A, NC_000002.12:g.9101454G>T, NC_000002.11:g.9241583G>A, NC_000002.11:g.9241583G>T

Select item 14885005864.

rs1488500586 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:9106895 (GRCh38)
2:9247024 (GRCh37)
Canonical SPDI:: NC_000002.12:9106894:T:C
Gene:: LOC105373414 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.9106895T>C, NC_000002.11:g.9247024T>C, XR_922767.2:n.3783T>C, XR_922767.1:n.2328T>C, XR_922769.2:n.3508T>C, XR_922769.1:n.2354T>C, XR_007086201.1:n.1981T>C

Select item 14884929405.

rs1488492940 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:9107489 (GRCh38)
2:9247618 (GRCh37)
Canonical SPDI:: NC_000002.12:9107488:C:T
Gene:: LOC105373414 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.9107489C>T, NC_000002.11:g.9247618C>T, XR_922767.2:n.4377C>T, XR_922767.1:n.2922C>T, XR_922769.2:n.4102C>T, XR_922769.1:n.2948C>T, XR_007086201.1:n.2575C>T

Select item 14880216236.

rs1488021623 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:9104818 (GRCh38)
2:9244947 (GRCh37)
Canonical SPDI:: NC_000002.12:9104817:C:G
Gene:: LOC105373414 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.9104818C>G, NC_000002.11:g.9244947C>G, NG_082453.1:g.465C>G

Select item 14877447367.

rs1487744736 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 14876416708.

rs1487641670 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:9108855 (GRCh38)
2:9248984 (GRCh37)
Canonical SPDI:: NC_000002.12:9108854:G:A
Gene:: LOC105373414 (Varview), LOC105373416 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.9108855G>A, NC_000002.11:g.9248984G>A, XR_922767.2:n.5743G>A, XR_922767.1:n.4288G>A, XR_922769.2:n.5468G>A, XR_922769.1:n.4314G>A, XR_007086201.1:n.3941G>A

Select item 14874745619.

rs1487474561 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:9109834 (GRCh38)
2:9249963 (GRCh37)
Canonical SPDI:: NC_000002.12:9109833:G:A
Gene:: LOC105373414 (Varview), LOC105373416 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000132/2 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000446/2 (Estonian)
HGVS:: NC_000002.12:g.9109834G>A, NC_000002.11:g.9249963G>A, XR_922767.2:n.6722G>A, XR_922767.1:n.5267G>A, XR_922769.2:n.6447G>A, XR_922769.1:n.5293G>A, XR_007086201.1:n.4920G>A

Select item 148727213710.

rs1487272137 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:9100734 (GRCh38)
2:9240863 (GRCh37)
Canonical SPDI:: NC_000002.12:9100733:C:T
Gene:: LOC105373414 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.9100734C>T, NC_000002.11:g.9240863C>T

Select item 148709679611.

rs1487096796 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:9104197 (GRCh38)
2:9244326 (GRCh37)
Canonical SPDI:: NC_000002.12:9104196:T:C
Gene:: LOC105373414 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.9104197T>C, NC_000002.11:g.9244326T>C, XR_922767.2:n.1494T>C, XR_922767.1:n.39T>C

Select item 148708091612.

rs1487080916 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:9110018 (GRCh38)
2:9250147 (GRCh37)
Canonical SPDI:: NC_000002.12:9110017:C:A,NC_000002.12:9110017:C:T
Gene:: LOC105373414 (Varview), LOC105373416 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.9110018C>A, NC_000002.12:g.9110018C>T, NC_000002.11:g.9250147C>A, NC_000002.11:g.9250147C>T

Select item 148702621213.

rs1487026212 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:9105251 (GRCh38)
2:9245380 (GRCh37)
Canonical SPDI:: NC_000002.12:9105250:T:C
Gene:: LOC105373414 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.9105251T>C, NC_000002.11:g.9245380T>C, NG_082453.1:g.898T>C, XR_922767.2:n.2139T>C, XR_922767.1:n.684T>C, XR_922769.2:n.1864T>C, XR_922769.1:n.710T>C, XR_007086201.1:n.654T>C

Select item 148654952314.

rs1486549523 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:9100825 (GRCh38)
2:9240954 (GRCh37)
Canonical SPDI:: NC_000002.12:9100824:G:A
Gene:: LOC105373414 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.9100825G>A, NC_000002.11:g.9240954G>A

Select item 148603300315.

rs1486033003 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:9108522 (GRCh38)
2:9248651 (GRCh37)
Canonical SPDI:: NC_000002.12:9108521:T:C
Gene:: LOC105373414 (Varview), LOC105373416 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.9108522T>C, NC_000002.11:g.9248651T>C, XR_922767.2:n.5410T>C, XR_922767.1:n.3955T>C, XR_922769.2:n.5135T>C, XR_922769.1:n.3981T>C, XR_007086201.1:n.3608T>C

Select item 148550188716.

rs1485501887 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTACCGGCC>- [Show Flanks]
Chromosome:: 2:9105756 (GRCh38)
2:9245885 (GRCh37)
Canonical SPDI:: NC_000002.12:9105752:GCCCTTACCGGCC:GCC
Gene:: LOC105373414 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.9105756_9105765del, NC_000002.11:g.9245885_9245894del, NG_082453.1:g.1400_1401insCCCTTACCGGCC, NG_082453.1:g.1400_1401insCC, XR_922767.2:n.2644_2653del, XR_922767.1:n.1189_1198del, XR_922769.2:n.2369_2378del, XR_922769.1:n.1215_1224del

Select item 148523771217.

rs1485237712 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:9105636 (GRCh38)
2:9245765 (GRCh37)
Canonical SPDI:: NC_000002.12:9105635:C:A
Gene:: LOC105373414 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000342/1 (KOREAN)
HGVS:: NC_000002.12:g.9105636C>A, NC_000002.11:g.9245765C>A, NG_082453.1:g.1283C>A, XR_922767.2:n.2524C>A, XR_922767.1:n.1069C>A, XR_922769.2:n.2249C>A, XR_922769.1:n.1095C>A

Select item 148521007018.

rs1485210070 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:9110170 (GRCh38)
2:9250299 (GRCh37)
Canonical SPDI:: NC_000002.12:9110169:T:C
Gene:: LOC105373414 (Varview), LOC105373416 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.9110170T>C, NC_000002.11:g.9250299T>C

Select item 148444015619.

rs1484440156 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 2:9105792 (GRCh38)
2:9245921 (GRCh37)
Canonical SPDI:: NC_000002.12:9105790:TTT:T
Gene:: LOC105373414 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.00005/7 (GnomAD)
-=0.000072/19 (TOPMED)
HGVS:: NC_000002.12:g.9105792_9105793del, NC_000002.11:g.9245921_9245922del, XR_922767.2:n.2680_2681del, XR_922767.1:n.1225_1226del, XR_922769.2:n.2405_2406del, XR_922769.1:n.1251_1252del

Select item 148416713820.

rs1484167138 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:9101522 (GRCh38)
2:9241651 (GRCh37)
Canonical SPDI:: NC_000002.12:9101521:A:T
Gene:: LOC105373414 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.9101522A>T, NC_000002.11:g.9241651A>T

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