SNP Links for Gene (Select 105373185) - SNP

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Select item 14910804331.

rs1491080433 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: X:41273747 (GRCh38)
X:41133000 (GRCh37)
Canonical SPDI:: NC_000023.11:41273746:AG:
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000023.11:g.41273747_41273748del, NC_000023.10:g.41133000_41133001del

Select item 14888239802.

rs1488823980 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:41276973 (GRCh38)
X:41136226 (GRCh37)
Canonical SPDI:: NC_000023.11:41276972:G:A
Gene:: LINC02601 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/3 (GnomAD)
A=0.000053/14 (TOPMED)
A=0.000208/1 (1000Genomes)
HGVS:: NC_000023.11:g.41276973G>A, NC_000023.10:g.41136226G>A

Select item 14879127383.

rs1487912738 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:41276452 (GRCh38)
X:41135705 (GRCh37)
Canonical SPDI:: NC_000023.11:41276451:C:T
Gene:: LINC02601 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000142/2 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.41276452C>T, NC_000023.10:g.41135705C>T, NR_135616.1:n.509C>T

Select item 14878415484.

rs1487841548 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:41276297 (GRCh38)
X:41135550 (GRCh37)
Canonical SPDI:: NC_000023.11:41276296:G:A
Gene:: LINC02601 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000023.11:g.41276297G>A, NC_000023.10:g.41135550G>A, NR_135616.1:n.354G>A

Select item 14877087395.

rs1487708739 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:41274512 (GRCh38)
X:41133765 (GRCh37)
Canonical SPDI:: NC_000023.11:41274511:T:A
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.41274512T>A, NC_000023.10:g.41133765T>A

Select item 14876112056.

rs1487611205 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:41274550 (GRCh38)
X:41133803 (GRCh37)
Canonical SPDI:: NC_000023.11:41274549:T:C
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.41274550T>C, NC_000023.10:g.41133803T>C

Select item 14868701277.

rs1486870127 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:41275703 (GRCh38)
X:41134956 (GRCh37)
Canonical SPDI:: NC_000023.11:41275702:C:T
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.41275703C>T, NC_000023.10:g.41134956C>T

Select item 14864214488.

rs1486421448 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: X:41273932 (GRCh38)
X:41133185 (GRCh37)
Canonical SPDI:: NC_000023.11:41273931:GG:G
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.00002/2 (GnomAD)
HGVS:: NC_000023.11:g.41273933del, NC_000023.10:g.41133186del

Select item 14862316699.

rs1486231669 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:41275135 (GRCh38)
X:41134388 (GRCh37)
Canonical SPDI:: NC_000023.11:41275134:G:T
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00113/25 (TOMMO)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000023.11:g.41275135G>T, NC_000023.10:g.41134388G>T

Select item 148597451010.

rs1485974510 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAGACATTTTAGGAGGAACT>- [Show Flanks]
Chromosome:: X:41274030 (GRCh38)
X:41133283 (GRCh37)
Canonical SPDI:: NC_000023.11:41274027:CTTAGACATTTTAGGAGGAACT:CT
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.41274030_41274049del, NC_000023.10:g.41133283_41133302del

Select item 148592269911.

rs1485922699 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:41275259 (GRCh38)
X:41134512 (GRCh37)
Canonical SPDI:: NC_000023.11:41275258:C:G,NC_000023.11:41275258:C:T
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.00001/1 (GnomAD)
T=0.000015/4 (TOPMED)
T=0.000208/1 (1000Genomes)
HGVS:: NC_000023.11:g.41275259C>G, NC_000023.11:g.41275259C>T, NC_000023.10:g.41134512C>G, NC_000023.10:g.41134512C>T

Select item 148559402612.

rs1485594026 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:41274645 (GRCh38)
X:41133898 (GRCh37)
Canonical SPDI:: NC_000023.11:41274644:G:A,NC_000023.11:41274644:G:C
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.41274645G>A, NC_000023.11:g.41274645G>C, NC_000023.10:g.41133898G>A, NC_000023.10:g.41133898G>C

Select item 148543930613.

rs1485439306 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:41275411 (GRCh38)
X:41134664 (GRCh37)
Canonical SPDI:: NC_000023.11:41275410:T:C
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000045/12 (TOPMED)
HGVS:: NC_000023.11:g.41275411T>C, NC_000023.10:g.41134664T>C

Select item 148197433014.

rs1481974330 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:41275812 (GRCh38)
X:41135065 (GRCh37)
Canonical SPDI:: NC_000023.11:41275811:A:G
Gene:: LINC02601 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.41275812A>G, NC_000023.10:g.41135065A>G, NR_135616.1:n.74A>G

Select item 148146468115.

rs1481464681 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:41275688 (GRCh38)
X:41134941 (GRCh37)
Canonical SPDI:: NC_000023.11:41275687:G:A,NC_000023.11:41275687:G:T
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.02163/63 (KOREAN)
HGVS:: NC_000023.11:g.41275688G>A, NC_000023.11:g.41275688G>T, NC_000023.10:g.41134941G>A, NC_000023.10:g.41134941G>T

Select item 148077487016.

rs1480774870 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:41274717 (GRCh38)
X:41133970 (GRCh37)
Canonical SPDI:: NC_000023.11:41274716:A:G
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00003/3 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000023.11:g.41274717A>G, NC_000023.10:g.41133970A>G

Select item 148053706017.

rs1480537060 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:41274354 (GRCh38)
X:41133607 (GRCh37)
Canonical SPDI:: NC_000023.11:41274353:G:A,NC_000023.11:41274353:G:C
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.00003/3 (GnomAD)
C=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.41274354G>A, NC_000023.11:g.41274354G>C, NC_000023.10:g.41133607G>A, NC_000023.10:g.41133607G>C

Select item 147887571718.

rs1478875717 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:41275801 (GRCh38)
X:41135054 (GRCh37)
Canonical SPDI:: NC_000023.11:41275800:C:T
Gene:: LINC02601 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.41275801C>T, NC_000023.10:g.41135054C>T, NR_135616.1:n.63C>T

Select item 147723991819.

rs1477239918 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:41275251 (GRCh38)
X:41134504 (GRCh37)
Canonical SPDI:: NC_000023.11:41275250:A:G
Gene:: LINC02601 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.41275251A>G, NC_000023.10:g.41134504A>G

Select item 147715130620.

rs1477151306 has merged into rs972392305 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: X:41275933 (GRCh38)
X:41135186 (GRCh37)
Canonical SPDI:: NC_000023.11:41275932:GGGGGG:GGGGG,NC_000023.11:41275932:GGGGGG:GGGGGGG
Gene:: LINC02601 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0./0 (ALFA)
-=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.41275938del, NC_000023.11:g.41275938dup, NC_000023.10:g.41135191del, NC_000023.10:g.41135191dup

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