SNP Links for Gene (Select 105371335) - SNP

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Select item 14915833751.

rs1491583375 has merged into rs138023031 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>-,G,GGG,GGGG,GGGGG,GGGGGG,GGGGGGG,GGGGGGGG [Show Flanks]
Chromosome:: 16:71515690 (GRCh38)
16:71549593 (GRCh37)
Canonical SPDI:: NC_000016.10:71515682:GGGGGGGGG:GGGGGGG,NC_000016.10:71515682:GGGGGGGGG:GGGGGGGG,NC_000016.10:71515682:GGGGGGGGG:GGGGGGGGGG,NC_000016.10:71515682:GGGGGGGGG:GGGGGGGGGGG,NC_000016.10:71515682:GGGGGGGGG:GGGGGGGGGGGG,NC_000016.10:71515682:GGGGGGGGG:GGGGGGGGGGGGG,NC_000016.10:71515682:GGGGGGGGG:GGGGGGGGGGGGGG,NC_000016.10:71515682:GGGGGGGGG:GGGGGGGGGGGGGGG
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGG=0./0 (ALFA)
HGVS:: NC_000016.10:g.71515690_71515691del, NC_000016.10:g.71515691del, NC_000016.10:g.71515691dup, NC_000016.10:g.71515690_71515691dup, NC_000016.10:g.71515689_71515691dup, NC_000016.10:g.71515688_71515691dup, NC_000016.10:g.71515687_71515691dup, NC_000016.10:g.71515686_71515691dup, NC_000016.9:g.71549593_71549594del, NC_000016.9:g.71549594del, NC_000016.9:g.71549594dup, NC_000016.9:g.71549593_71549594dup, NC_000016.9:g.71549592_71549594dup, NC_000016.9:g.71549591_71549594dup, NC_000016.9:g.71549590_71549594dup, NC_000016.9:g.71549589_71549594dup

Select item 14912986252.

rs1491298625 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:71516845 (GRCh38)
16:71550748 (GRCh37)
Canonical SPDI:: NC_000016.10:71516844:CA:
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00497/59 (ALFA)
HGVS:: NC_000016.10:g.71516845_71516846del, NC_000016.9:g.71550748_71550749del

Select item 14911154323.

rs1491115432 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,T [Show Flanks]
Chromosome:: 16:71515683 (GRCh38)
16:71549587 (GRCh37)
Canonical SPDI:: NC_000016.10:71515683::C,NC_000016.10:71515683::T
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.71515683_71515684insC, NC_000016.10:g.71515683_71515684insT, NC_000016.9:g.71549586_71549587insC, NC_000016.9:g.71549586_71549587insT

Select item 14911064804.

rs1491106480 has merged into rs57902389 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,AA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 16:71516851 (GRCh38)
16:71550754 (GRCh37)
Canonical SPDI:: NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000016.10:71516845:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0./0 (ALFA)
-=0.4155/2081 (1000Genomes)
HGVS:: NC_000016.10:g.71516851_71516862del, NC_000016.10:g.71516853_71516862del, NC_000016.10:g.71516856_71516862del, NC_000016.10:g.71516857_71516862del, NC_000016.10:g.71516858_71516862del, NC_000016.10:g.71516859_71516862del, NC_000016.10:g.71516860_71516862del, NC_000016.10:g.71516861_71516862del, NC_000016.10:g.71516862del, NC_000016.10:g.71516862dup, NC_000016.10:g.71516861_71516862dup, NC_000016.9:g.71550754_71550765del, NC_000016.9:g.71550756_71550765del, NC_000016.9:g.71550759_71550765del, NC_000016.9:g.71550760_71550765del, NC_000016.9:g.71550761_71550765del, NC_000016.9:g.71550762_71550765del, NC_000016.9:g.71550763_71550765del, NC_000016.9:g.71550764_71550765del, NC_000016.9:g.71550765del, NC_000016.9:g.71550765dup, NC_000016.9:g.71550764_71550765dup

Select item 14910119865.

rs1491011986 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 16:71516861 (GRCh38)
16:71550765 (GRCh37)
Canonical SPDI:: NC_000016.10:71516861::G
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/2 (GnomAD)
HGVS:: NC_000016.10:g.71516861_71516862insG, NC_000016.9:g.71550764_71550765insG

Select item 14904265296.

rs1490426529 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 16:71516863 (GRCh38)
16:71550766 (GRCh37)
Canonical SPDI:: NC_000016.10:71516862:G:
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000016.10:g.71516863del, NC_000016.9:g.71550766del

Select item 14902226187.

rs1490222618 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:71513851 (GRCh38)
16:71547754 (GRCh37)
Canonical SPDI:: NC_000016.10:71513850:A:G
Gene:: LOC105371335 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.71513851A>G, NC_000016.9:g.71547754A>G, NR_135171.1:n.41A>G, NR_135172.1:n.41A>G

Select item 14895711358.

rs1489571135 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:71516414 (GRCh38)
16:71550317 (GRCh37)
Canonical SPDI:: NC_000016.10:71516413:G:A
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.71516414G>A, NC_000016.9:g.71550317G>A

Select item 14895088019.

rs1489508801 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 16:71513161 (GRCh38)
16:71547064 (GRCh37)
Canonical SPDI:: NC_000016.10:71513160:A:T
Gene:: LOC105371335 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.71513161A>T, NC_000016.9:g.71547064A>T

Select item 148939959910.

rs1489399599 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:71513925 (GRCh38)
16:71547828 (GRCh37)
Canonical SPDI:: NC_000016.10:71513924:C:G
Gene:: LOC105371335 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.71513925C>G, NC_000016.9:g.71547828C>G, NR_135171.1:n.115C>G, NR_135172.1:n.115C>G

Select item 148819853411.

rs1488198534 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:71518194 (GRCh38)
16:71552097 (GRCh37)
Canonical SPDI:: NC_000016.10:71518193:T:A
Gene:: LOC105371335 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.71518194T>A, NC_000016.9:g.71552097T>A

Select item 148786608212.

rs1487866082 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:71512230 (GRCh38)
16:71546133 (GRCh37)
Canonical SPDI:: NC_000016.10:71512229:T:A
Gene:: LOC105371335 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000023/6 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000016.10:g.71512230T>A, NC_000016.9:g.71546133T>A

Select item 148697290013.

rs1486972900 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 16:71518280 (GRCh38)
16:71552183 (GRCh37)
Canonical SPDI:: NC_000016.10:71518279:A:T
Gene:: LOC105371335 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.71518280A>T, NC_000016.9:g.71552183A>T

Select item 148676939414.

rs1486769394 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:71512068 (GRCh38)
16:71545971 (GRCh37)
Canonical SPDI:: NC_000016.10:71512067:T:G
Gene:: LOC105371335 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000016.10:g.71512068T>G, NC_000016.9:g.71545971T>G

Select item 148623911115.

rs1486239111 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:71516387 (GRCh38)
16:71550290 (GRCh37)
Canonical SPDI:: NC_000016.10:71516386:T:C
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.71516387T>C, NC_000016.9:g.71550290T>C

Select item 148428710116.

rs1484287101 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:71514553 (GRCh38)
16:71548456 (GRCh37)
Canonical SPDI:: NC_000016.10:71514552:C:T
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.71514553C>T, NC_000016.9:g.71548456C>T

Select item 148372823517.

rs1483728235 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:71514492 (GRCh38)
16:71548395 (GRCh37)
Canonical SPDI:: NC_000016.10:71514491:A:G
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.71514492A>G, NC_000016.9:g.71548395A>G

Select item 148328560418.

rs1483285604 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:71514627 (GRCh38)
16:71548530 (GRCh37)
Canonical SPDI:: NC_000016.10:71514626:T:C
Gene:: LOC105371335 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.00003/8 (TOPMED)
C=0.000057/8 (GnomAD)
HGVS:: NC_000016.10:g.71514627T>C, NC_000016.9:g.71548530T>C

Select item 148285714719.

rs1482857147 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148261589820.

rs1482615898 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:71512543 (GRCh38)
16:71546446 (GRCh37)
Canonical SPDI:: NC_000016.10:71512542:C:A
Gene:: LOC105371335 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.71512543C>A, NC_000016.9:g.71546446C>A

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