SNP Links for Gene (Select 105370798) - SNP

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Select item 14908515191.

rs1490851519 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:44852728 (GRCh38)
15:45144926 (GRCh37)
Canonical SPDI:: NC_000015.10:44852727:T:C
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.00006/1 (TOMMO)
HGVS:: NC_000015.10:g.44852728T>C, NC_000015.9:g.45144926T>C, NT_187605.1:g.177048T>C

Select item 14901833252.

rs1490183325 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:44852623 (GRCh38)
15:45144821 (GRCh37)
Canonical SPDI:: NC_000015.10:44852622:G:A
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.44852623G>A, NC_000015.9:g.45144821G>A, NT_187605.1:g.176943G>A

Select item 14893290423.

rs1489329042 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:44854941 (GRCh38)
15:45147139 (GRCh37)
Canonical SPDI:: NC_000015.10:44854940:G:C
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000015.10:g.44854941G>C, NC_000015.9:g.45147139G>C, NT_187605.1:g.179274G>C

Select item 14892803284.

rs1489280328 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:44853568 (GRCh38)
15:45145766 (GRCh37)
Canonical SPDI:: NC_000015.10:44853567:G:A
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.44853568G>A, NC_000015.9:g.45145766G>A, NT_187605.1:g.177888G>A

Select item 14892292135.

rs1489229213 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:44857244 (GRCh38)
15:45149442 (GRCh37)
Canonical SPDI:: NC_000015.10:44857243:AT:
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: -=0.00159/44 (TOMMO)
HGVS:: NC_000015.10:g.44857244_44857245del, NC_000015.9:g.45149442_45149443del, NT_187605.1:g.181589G>A, NT_187605.1:g.181589GT[1]

Select item 14886410396.

rs1488641039 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:44853511 (GRCh38)
15:45145709 (GRCh37)
Canonical SPDI:: NC_000015.10:44853510:G:A
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.44853511G>A, NC_000015.9:g.45145709G>A, NT_187605.1:g.177831G>A

Select item 14876959887.

rs1487695988 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 15:44854051 (GRCh38)
15:45146250 (GRCh37)
Canonical SPDI:: NC_000015.10:44854051::A
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.000081/11 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.44854051_44854052insA, NC_000015.9:g.45146249_45146250insA, NT_187605.1:g.178371_178372insA

Select item 14872719598.

rs1487271959 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:44854002 (GRCh38)
15:45146200 (GRCh37)
Canonical SPDI:: NC_000015.10:44854001:T:C
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.44854002T>C, NC_000015.9:g.45146200T>C, NT_187605.1:g.178322T>C

Select item 14863914529.

rs1486391452 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:44855271 (GRCh38)
15:45147469 (GRCh37)
Canonical SPDI:: NC_000015.10:44855270:T:C
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000015.10:g.44855271T>C, NC_000015.9:g.45147469T>C, NT_187605.1:g.179604T>C

Select item 148598367010.

rs1485983670 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:44853787 (GRCh38)
15:45145985 (GRCh37)
Canonical SPDI:: NC_000015.10:44853786:T:G
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.44853787T>G, NC_000015.9:g.45145985T>G, NT_187605.1:g.178107T>G

Select item 148580353611.

rs1485803536 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:44855805 (GRCh38)
15:45148003 (GRCh37)
Canonical SPDI:: NC_000015.10:44855804:G:A
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.44855805G>A, NC_000015.9:g.45148003G>A, NT_187605.1:g.180138G>A

Select item 148570821812.

rs1485708218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:44856468 (GRCh38)
15:45148666 (GRCh37)
Canonical SPDI:: NC_000015.10:44856467:G:T
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.44856468G>T, NC_000015.9:g.45148666G>T, NT_187605.1:g.180801G>T

Select item 148570284713.

rs1485702847 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:44854591 (GRCh38)
15:45146789 (GRCh37)
Canonical SPDI:: NC_000015.10:44854590:T:C
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.44854591T>C, NC_000015.9:g.45146789T>C, NT_187605.1:g.178923T>C, XR_932185.3:n.35T>C, XR_932185.2:n.123T>C, XR_932185.1:n.33T>C, XR_951894.3:n.35T>C, XR_951894.2:n.123T>C, XR_951894.1:n.33T>C

Select item 148517785714.

rs1485177857 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:44856249 (GRCh38)
15:45148447 (GRCh37)
Canonical SPDI:: NC_000015.10:44856248:C:T
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.44856249C>T, NC_000015.9:g.45148447C>T, NT_187605.1:g.180582C>T

Select item 148489234615.

rs1484892346 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:44853448 (GRCh38)
15:45145646 (GRCh37)
Canonical SPDI:: NC_000015.10:44853447:G:C
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.44853448G>C, NC_000015.9:g.45145646G>C, NT_187605.1:g.177768G>C

Select item 148444697416.

rs1484446974 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:44856469 (GRCh38)
15:45148667 (GRCh37)
Canonical SPDI:: NC_000015.10:44856468:C:G
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.44856469C>G, NC_000015.9:g.45148667C>G, NT_187605.1:g.180802C>G

Select item 148419492817.

rs1484194928 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:44854090 (GRCh38)
15:45146288 (GRCh37)
Canonical SPDI:: NC_000015.10:44854089:C:T
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.44854090C>T, NC_000015.9:g.45146288C>T, NT_187605.1:g.178422C>T

Select item 148356595918.

rs1483565959 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:44855140 (GRCh38)
15:45147338 (GRCh37)
Canonical SPDI:: NC_000015.10:44855139:A:G
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00101/12 (ALFA)
G=0.00078/5 (1000Genomes)
HGVS:: NC_000015.10:g.44855140A>G, NC_000015.9:g.45147338A>G, NT_187605.1:g.179473A>G

Select item 148162308019.

rs1481623080 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:44856313 (GRCh38)
15:45148511 (GRCh37)
Canonical SPDI:: NC_000015.10:44856312:C:T
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000045/6 (GnomAD)
T=0.001093/7 (1000Genomes)
HGVS:: NC_000015.10:g.44856313C>T, NC_000015.9:g.45148511C>T, NT_187605.1:g.180646C>T

Select item 148010346820.

rs1480103468 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:44853577 (GRCh38)
15:45145775 (GRCh37)
Canonical SPDI:: NC_000015.10:44853576:T:C
Gene:: SORD2P (Varview), LOC105370798 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.44853577T>C, NC_000015.9:g.45145775T>C, NT_187605.1:g.177897T>C

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