SNP Links for Gene (Select 105370141) - SNP

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Select item 14910925321.

rs1491092532 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTT [Show Flanks]
Chromosome:: 13:30160383 (GRCh38)
13:30734520 (GRCh37)
Canonical SPDI:: NC_000013.11:30160380:TTTT:TT,NC_000013.11:30160380:TTTT:TTTTT
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000043/6 (GnomAD)
-=0.00006/1 (TOMMO)
HGVS:: NC_000013.11:g.30160383_30160384del, NC_000013.11:g.30160384dup, NC_000013.10:g.30734520_30734521del, NC_000013.10:g.30734521dup

Select item 14908180712.

rs1490818071 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:30163812 (GRCh38)
13:30737949 (GRCh37)
Canonical SPDI:: NC_000013.11:30163811:T:C
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000013.11:g.30163812T>C, NC_000013.10:g.30737949T>C

Select item 14906184433.

rs1490618443 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 13:30156429 (GRCh38)
13:30730566 (GRCh37)
Canonical SPDI:: NC_000013.11:30156428:G:A,NC_000013.11:30156428:G:C
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30156429G>A, NC_000013.11:g.30156429G>C, NC_000013.10:g.30730566G>A, NC_000013.10:g.30730566G>C

Select item 14904153064.

rs1490415306 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:30156949 (GRCh38)
13:30731086 (GRCh37)
Canonical SPDI:: NC_000013.11:30156948:C:T
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.30156949C>T, NC_000013.10:g.30731086C>T

Select item 14903286015.

rs1490328601 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 13:30164318 (GRCh38)
13:30738455 (GRCh37)
Canonical SPDI:: NC_000013.11:30164317:AT:
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.30164318_30164319del, NC_000013.10:g.30738455_30738456del

Select item 14902693796.

rs1490269379 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 13:30165489 (GRCh38)
13:30739626 (GRCh37)
Canonical SPDI:: NC_000013.11:30165488:G:C,NC_000013.11:30165488:G:T
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.30165489G>C, NC_000013.11:g.30165489G>T, NC_000013.10:g.30739626G>C, NC_000013.10:g.30739626G>T

Select item 14900706547.

rs1490070654 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:30157891 (GRCh38)
13:30732028 (GRCh37)
Canonical SPDI:: NC_000013.11:30157890:G:A
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.30157891G>A, NC_000013.10:g.30732028G>A

Select item 14899035578.

rs1489903557 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:30150269 (GRCh38)
13:30724406 (GRCh37)
Canonical SPDI:: NC_000013.11:30150268:T:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.30150269T>A, NC_000013.10:g.30724406T>A

Select item 14898345649.

rs1489834564 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:30164716 (GRCh38)
13:30738853 (GRCh37)
Canonical SPDI:: NC_000013.11:30164715:C:T
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000013.11:g.30164716C>T, NC_000013.10:g.30738853C>T

Select item 148972270810.

rs1489722708 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:30159118 (GRCh38)
13:30733255 (GRCh37)
Canonical SPDI:: NC_000013.11:30159117:T:C
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.30159118T>C, NC_000013.10:g.30733255T>C

Select item 148948249511.

rs1489482495 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:30162908 (GRCh38)
13:30737045 (GRCh37)
Canonical SPDI:: NC_000013.11:30162907:A:G
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.30162908A>G, NC_000013.10:g.30737045A>G

Select item 148941580412.

rs1489415804 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 13:30158278 (GRCh38)
13:30732415 (GRCh37)
Canonical SPDI:: NC_000013.11:30158277:A:
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.30158278del, NC_000013.10:g.30732415del

Select item 148935624813.

rs1489356248 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 13:30166140 (GRCh38)
13:30740277 (GRCh37)
Canonical SPDI:: NC_000013.11:30166139:C:G,NC_000013.11:30166139:C:T
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.30166140C>G, NC_000013.11:g.30166140C>T, NC_000013.10:g.30740277C>G, NC_000013.10:g.30740277C>T

Select item 148933838614.

rs1489338386 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:30150393 (GRCh38)
13:30724530 (GRCh37)
Canonical SPDI:: NC_000013.11:30150392:G:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000013.11:g.30150393G>A, NC_000013.10:g.30724530G>A

Select item 148932392215.

rs1489323922 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:30152061 (GRCh38)
13:30726198 (GRCh37)
Canonical SPDI:: NC_000013.11:30152060:C:G
Gene:: LINC00384 (Varview), LINC00385 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30152061C>G, NC_000013.10:g.30726198C>G, NR_138041.1:n.130G>C

Select item 148924351616.

rs1489243516 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:30154739 (GRCh38)
13:30728876 (GRCh37)
Canonical SPDI:: NC_000013.11:30154738:T:C
Gene:: LINC00384 (Varview), LINC00385 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.30154739T>C, NC_000013.10:g.30728876T>C, XR_002957502.2:n.1129T>C, XR_002957502.1:n.1813T>C, XR_002957504.2:n.978T>C, XR_002957504.1:n.871T>C, XR_007063740.1:n.831T>C

Select item 148921947417.

rs1489219474 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:30168448 (GRCh38)
13:30742585 (GRCh37)
Canonical SPDI:: NC_000013.11:30168447:G:A
Gene:: LINC00385 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000013.11:g.30168448G>A, NC_000013.10:g.30742585G>A

Select item 148903928818.

rs1489039288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:30150902 (GRCh38)
13:30725039 (GRCh37)
Canonical SPDI:: NC_000013.11:30150901:C:T
Gene:: LINC00385 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.30150902C>T, NC_000013.10:g.30725039C>T

Select item 148882519319.

rs1488825193 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:30152001 (GRCh38)
13:30726138 (GRCh37)
Canonical SPDI:: NC_000013.11:30152000:G:T
Gene:: LINC00384 (Varview), LINC00385 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.30152001G>T, NC_000013.10:g.30726138G>T, NR_138041.1:n.190C>A

Select item 148846022420.

rs1488460224 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 13:30154318 (GRCh38)
13:30728455 (GRCh37)
Canonical SPDI:: NC_000013.11:30154317:G:A,NC_000013.11:30154317:G:C
Gene:: LINC00384 (Varview), LINC00385 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.30154318G>A, NC_000013.11:g.30154318G>C, NC_000013.10:g.30728455G>A, NC_000013.10:g.30728455G>C, XR_002957502.2:n.708G>A, XR_002957502.2:n.708G>C, XR_002957502.1:n.1392G>A, XR_002957502.1:n.1392G>C, XR_002957504.2:n.557G>A, XR_002957504.2:n.557G>C, XR_002957504.1:n.450G>A, XR_002957504.1:n.450G>C, XR_007063740.1:n.410G>A, XR_007063740.1:n.410G>C

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