SNP Links for Gene (Select 105369730) - SNP

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Select item 14910467781.

rs1491046778 has merged into rs35535845 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTT>-,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 12:39090664 (GRCh38)
12:39484466 (GRCh37)
Canonical SPDI:: NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:39090655:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000012.12:g.39090664_39090675del, NC_000012.12:g.39090673_39090675del, NC_000012.12:g.39090674_39090675del, NC_000012.12:g.39090675del, NC_000012.12:g.39090675dup, NC_000012.12:g.39090674_39090675dup, NC_000012.12:g.39090673_39090675dup, NC_000012.12:g.39090672_39090675dup, NC_000012.12:g.39090671_39090675dup, NC_000012.12:g.39090670_39090675dup, NC_000012.12:g.39090669_39090675dup, NC_000012.11:g.39484466_39484477del, NC_000012.11:g.39484475_39484477del, NC_000012.11:g.39484476_39484477del, NC_000012.11:g.39484477del, NC_000012.11:g.39484477dup, NC_000012.11:g.39484476_39484477dup, NC_000012.11:g.39484475_39484477dup, NC_000012.11:g.39484474_39484477dup, NC_000012.11:g.39484473_39484477dup, NC_000012.11:g.39484472_39484477dup, NC_000012.11:g.39484471_39484477dup

Select item 14908162932.

rs1490816293 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:39094050 (GRCh38)
12:39487852 (GRCh37)
Canonical SPDI:: NC_000012.12:39094049:C:A
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.39094050C>A, NC_000012.11:g.39487852C>A

Select item 14906776313.

rs1490677631 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:39095106 (GRCh38)
12:39488908 (GRCh37)
Canonical SPDI:: NC_000012.12:39095105:G:T
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.39095106G>T, NC_000012.11:g.39488908G>T

Select item 14905375504.

rs1490537550 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:39096405 (GRCh38)
12:39490207 (GRCh37)
Canonical SPDI:: NC_000012.12:39096404:G:T
Gene:: LINC02406 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.39096405G>T, NC_000012.11:g.39490207G>T

Select item 14903977545.

rs1490397754 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:39087005 (GRCh38)
12:39480807 (GRCh37)
Canonical SPDI:: NC_000012.12:39087004:C:G,NC_000012.12:39087004:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.00006/16 (TOPMED)
HGVS:: NC_000012.12:g.39087005C>G, NC_000012.12:g.39087005C>T, NC_000012.11:g.39480807C>G, NC_000012.11:g.39480807C>T

Select item 14903285156.

rs1490328515 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:39094606 (GRCh38)
12:39488408 (GRCh37)
Canonical SPDI:: NC_000012.12:39094605:T:C
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.39094606T>C, NC_000012.11:g.39488408T>C

Select item 14902445567.

rs1490244556 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:39096414 (GRCh38)
12:39490216 (GRCh37)
Canonical SPDI:: NC_000012.12:39096413:A:G
Gene:: LINC02406 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000012.12:g.39096414A>G, NC_000012.11:g.39490216A>G

Select item 14891895118.

rs1489189511 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:39096105 (GRCh38)
12:39489907 (GRCh37)
Canonical SPDI:: NC_000012.12:39096104:C:T
Gene:: LINC02406 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.39096105C>T, NC_000012.11:g.39489907C>T

Select item 14878196409.

rs1487819640 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 12:39090646 (GRCh38)
12:39484448 (GRCh37)
Canonical SPDI:: NC_000012.12:39090645:G:C,NC_000012.12:39090645:G:T
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000012.12:g.39090646G>C, NC_000012.12:g.39090646G>T, NC_000012.11:g.39484448G>C, NC_000012.11:g.39484448G>T

Select item 148698475110.

rs1486984751 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:39094209 (GRCh38)
12:39488011 (GRCh37)
Canonical SPDI:: NC_000012.12:39094208:G:A
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.39094209G>A, NC_000012.11:g.39488011G>A

Select item 148647178911.

rs1486471789 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:39096986 (GRCh38)
12:39490788 (GRCh37)
Canonical SPDI:: NC_000012.12:39096985:T:C
Gene:: LINC02406 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.39096986T>C, NC_000012.11:g.39490788T>C

Select item 148635143612.

rs1486351436 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:39090278 (GRCh38)
12:39484080 (GRCh37)
Canonical SPDI:: NC_000012.12:39090277:G:C
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
C=0.00463/1 (Vietnamese)
HGVS:: NC_000012.12:g.39090278G>C, NC_000012.11:g.39484080G>C

Select item 148526047413.

rs1485260474 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:39092156 (GRCh38)
12:39485958 (GRCh37)
Canonical SPDI:: NC_000012.12:39092155:C:T
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.39092156C>T, NC_000012.11:g.39485958C>T

Select item 148520508714.

rs1485205087 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 12:39091202 (GRCh38)
12:39485004 (GRCh37)
Canonical SPDI:: NC_000012.12:39091201:G:A,NC_000012.12:39091201:G:C,NC_000012.12:39091201:G:T
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000012.12:g.39091202G>A, NC_000012.12:g.39091202G>C, NC_000012.12:g.39091202G>T, NC_000012.11:g.39485004G>A, NC_000012.11:g.39485004G>C, NC_000012.11:g.39485004G>T

Select item 148461991015.

rs1484619910 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:39095265 (GRCh38)
12:39489067 (GRCh37)
Canonical SPDI:: NC_000012.12:39095264:T:A
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.39095265T>A, NC_000012.11:g.39489067T>A

Select item 148461850116.

rs1484618501 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:39087369 (GRCh38)
12:39481171 (GRCh37)
Canonical SPDI:: NC_000012.12:39087368:A:G
Gene:: LINC02406 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000064/9 (GnomAD)
G=0.008333/5 (NorthernSweden)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000012.12:g.39087369A>G, NC_000012.11:g.39481171A>G

Select item 148456056817.

rs1484560568 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:39097255 (GRCh38)
12:39491057 (GRCh37)
Canonical SPDI:: NC_000012.12:39097254:C:T
Gene:: LINC02406 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.39097255C>T, NC_000012.11:g.39491057C>T

Select item 148393716718.

rs1483937167 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:39088935 (GRCh38)
12:39482737 (GRCh37)
Canonical SPDI:: NC_000012.12:39088934:C:T
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.39088935C>T, NC_000012.11:g.39482737C>T

Select item 148371965419.

rs1483719654 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:39089493 (GRCh38)
12:39483295 (GRCh37)
Canonical SPDI:: NC_000012.12:39089492:C:G,NC_000012.12:39089492:C:T
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.39089493C>G, NC_000012.12:g.39089493C>T, NC_000012.11:g.39483295C>G, NC_000012.11:g.39483295C>T

Select item 148331359520.

rs1483313595 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:39093257 (GRCh38)
12:39487059 (GRCh37)
Canonical SPDI:: NC_000012.12:39093256:A:G
Gene:: LINC02406 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.39093257A>G, NC_000012.11:g.39487059A>G

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