SNP Links for Gene (Select 10475) - SNP

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:25977910 (GRCh38)
6:25978138 (GRCh37)
Canonical SPDI:: NC_000006.12:25977909:C:T
Gene:: TRIM38 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.25977910C>T, NC_000006.11:g.25978138C>T, XM_047418080.1:c.*2435C>T

Select item 14902315419.

rs1490231541 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:25961312 (GRCh38)
6:25961540 (GRCh37)
Canonical SPDI:: NC_000006.12:25961311:T:C
Gene:: TRIM38 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000006.12:g.25961312T>C, NC_000006.11:g.25961540T>C

Select item 149011113810.

rs1490111138 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:25969742 (GRCh38)
6:25969970 (GRCh37)
Canonical SPDI:: NC_000006.12:25969741:C:A
Gene:: TRIM38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.25969742C>A, NC_000006.11:g.25969970C>A

Select item 149006776211.

rs1490067762 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 6:25988026 (GRCh38)
6:25988254 (GRCh37)
Canonical SPDI:: NC_000006.12:25988025:A:C,NC_000006.12:25988025:A:G
Gene:: TRIM38 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000006.12:g.25988026A>C, NC_000006.12:g.25988026A>G, NC_000006.11:g.25988254A>C, NC_000006.11:g.25988254A>G, XM_005248800.6:c.*4339A>C, XM_005248800.6:c.*4339A>G, XM_005248800.5:c.*4339A>C, XM_005248800.5:c.*4339A>G, XM_005248800.4:c.*4339A>C, XM_005248800.4:c.*4339A>G, XM_005248799.6:c.*4339A>C, XM_005248799.6:c.*4339A>G, XM_005248799.5:c.*4339A>C, XM_005248799.5:c.*4339A>G, XM_005248799.4:c.*4339A>C, XM_005248799.4:c.*4339A>G, NM_006355.5:c.*4339A>C, NM_006355.5:c.*4339A>G, XM_024446303.2:c.*4339A>C, XM_024446303.2:c.*4339A>G, XM_024446303.1:c.*4339A>C, XM_024446303.1:c.*4339A>G, XM_047418079.1:c.*4339A>C, XM_047418079.1:c.*4339A>G

Select item 148990326312.

rs1489903263 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTT [Show Flanks]
Chromosome:: 6:25988472 (GRCh38)
6:25988700 (GRCh37)
Canonical SPDI:: NC_000006.12:25988468:TTTTT:TTT,NC_000006.12:25988468:TTTTT:TTTTTT
Gene:: TRIM38 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.25988472_25988473del, NC_000006.12:g.25988473dup, NC_000006.11:g.25988700_25988701del, NC_000006.11:g.25988701dup, XM_005248800.6:c.*4785_*4786del, XM_005248800.6:c.*4786dup, XM_005248800.5:c.*4785_*4786del, XM_005248800.5:c.*4786dup, XM_005248800.4:c.*4785_*4786del, XM_005248800.4:c.*4786dup, XM_005248799.6:c.*4785_*4786del, XM_005248799.6:c.*4786dup, XM_005248799.5:c.*4785_*4786del, XM_005248799.5:c.*4786dup, XM_005248799.4:c.*4785_*4786del, XM_005248799.4:c.*4786dup, NM_006355.5:c.*4785_*4786del, NM_006355.5:c.*4786dup, XM_024446303.2:c.*4785_*4786del, XM_024446303.2:c.*4786dup, XM_024446303.1:c.*4785_*4786del, XM_024446303.1:c.*4786dup, XM_047418079.1:c.*4785_*4786del, XM_047418079.1:c.*4786dup

Select item 148988014613.

rs1489880146 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:25960718 (GRCh38)
6:25960946 (GRCh37)
Canonical SPDI:: NC_000006.12:25960717:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000006.12:g.25960718T>C, NC_000006.11:g.25960946T>C

Select item 148952919714.

rs1489529197 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 6:25960973 (GRCh38)
6:25961202 (GRCh37)
Canonical SPDI:: NC_000006.12:25960973:A:AA
Gene:: TRIM38 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.25960974dup, NC_000006.11:g.25961202dup

Select item 148940253415.

rs1489402534 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:25975748 (GRCh38)
6:25975976 (GRCh37)
Canonical SPDI:: NC_000006.12:25975747:C:T
Gene:: TRIM38 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000006.12:g.25975748C>T, NC_000006.11:g.25975976C>T, XM_047418080.1:c.*273C>T

Select item 148939136516.

rs1489391365 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:25974731 (GRCh38)
6:25974959 (GRCh37)
Canonical SPDI:: NC_000006.12:25974730:C:A
Gene:: TRIM38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.25974731C>A, NC_000006.11:g.25974959C>A

Select item 148925720217.

rs1489257202 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:25983915 (GRCh38)
6:25984143 (GRCh37)
Canonical SPDI:: NC_000006.12:25983914:T:C
Gene:: TRIM38 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.25983915T>C, NC_000006.11:g.25984143T>C, XM_005248800.6:c.*228T>C, XM_005248800.5:c.*228T>C, XM_005248800.4:c.*228T>C, XM_005248800.3:c.*228T>C, XM_005248800.2:c.*228T>C, XM_005248800.1:c.*228T>C, XM_005248799.6:c.*228T>C, XM_005248799.5:c.*228T>C, XM_005248799.4:c.*228T>C, XM_005248799.3:c.*228T>C, XM_005248799.2:c.*228T>C, XM_005248799.1:c.*228T>C, NM_006355.5:c.*228T>C, NM_006355.4:c.*228T>C, NM_006355.3:c.*228T>C, XM_024446303.2:c.*228T>C, XM_024446303.1:c.*228T>C, XM_047418079.1:c.*228T>C

Select item 148915627618.

rs1489156276 has merged into rs962140120 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 6:25985123 (GRCh38)
6:25985351 (GRCh37)
Canonical SPDI:: NC_000006.12:25985122:AAAAAAAA:AAAAAAA,NC_000006.12:25985122:AAAAAAAA:AAAAAAAAA
Gene:: TRIM38 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
-=0.000043/6 (GnomAD)
HGVS:: NC_000006.12:g.25985130del, NC_000006.12:g.25985130dup, NC_000006.11:g.25985358del, NC_000006.11:g.25985358dup, XM_005248800.6:c.*1443del, XM_005248800.6:c.*1443dup, XM_005248800.5:c.*1443del, XM_005248800.5:c.*1443dup, XM_005248800.4:c.*1443del, XM_005248800.4:c.*1443dup, XM_005248800.3:c.*1443del, XM_005248800.3:c.*1443dup, XM_005248799.6:c.*1443del, XM_005248799.6:c.*1443dup, XM_005248799.5:c.*1443del, XM_005248799.5:c.*1443dup, XM_005248799.4:c.*1443del, XM_005248799.4:c.*1443dup, XM_005248799.3:c.*1443del, XM_005248799.3:c.*1443dup, NM_006355.5:c.*1443del, NM_006355.5:c.*1443dup, NM_006355.4:c.*1443del, NM_006355.4:c.*1443dup, NM_006355.3:c.*1443del, NM_006355.3:c.*1443dup, XM_024446303.2:c.*1443del, XM_024446303.2:c.*1443dup, XM_024446303.1:c.*1443del, XM_024446303.1:c.*1443dup, XM_047418079.1:c.*1443del, XM_047418079.1:c.*1443dup

Select item 148887685619.

rs1488876856 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:25984490 (GRCh38)
6:25984718 (GRCh37)
Canonical SPDI:: NC_000006.12:25984489:G:A
Gene:: TRIM38 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000045/12 (TOPMED)
A=0.000086/12 (GnomAD)
HGVS:: NC_000006.12:g.25984490G>A, NC_000006.11:g.25984718G>A, XM_005248800.6:c.*803G>A, XM_005248800.5:c.*803G>A, XM_005248800.4:c.*803G>A, XM_005248800.3:c.*803G>A, XM_005248800.1:c.*803G>A, XM_005248799.6:c.*803G>A, XM_005248799.5:c.*803G>A, XM_005248799.4:c.*803G>A, XM_005248799.3:c.*803G>A, XM_005248799.1:c.*803G>A, NM_006355.5:c.*803G>A, NM_006355.4:c.*803G>A, NM_006355.3:c.*803G>A, XM_024446303.2:c.*803G>A, XM_024446303.1:c.*803G>A, XM_047418079.1:c.*803G>A

Select item 148885631420.

rs1488856314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:25985534 (GRCh38)
6:25985762 (GRCh37)
Canonical SPDI:: NC_000006.12:25985533:G:A
Gene:: TRIM38 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.25985534G>A, NC_000006.11:g.25985762G>A, XM_005248800.6:c.*1847G>A, XM_005248800.5:c.*1847G>A, XM_005248800.4:c.*1847G>A, XM_005248799.6:c.*1847G>A, XM_005248799.5:c.*1847G>A, XM_005248799.4:c.*1847G>A, NM_006355.5:c.*1847G>A, NM_006355.4:c.*1847G>A, NM_006355.3:c.*1847G>A, XM_024446303.2:c.*1847G>A, XM_024446303.1:c.*1847G>A, XM_047418079.1:c.*1847G>A

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