SNP Links for Gene (Select 104355218) - SNP

Links from Gene

Items: 1 to 20 of 1735

<< First< Prev

Page of 87

Next >Last >>

Select item 14914683051.

rs1491468305 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 16:9446663 (GRCh38)
16:9540520 (GRCh37)
Canonical SPDI:: NC_000016.10:9446661:TAT:T
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.0024/9 (TWINSUK)
-=0.0031/12 (ALSPAC)
HGVS:: NC_000016.10:g.9446663_9446664del, NC_000016.9:g.9540520_9540521del

Select item 14906833312.

rs1490683331 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9445685 (GRCh38)
16:9539542 (GRCh37)
Canonical SPDI:: NC_000016.10:9445684:A:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.9445685A>G, NC_000016.9:g.9539542A>G

Select item 14902013253.

rs1490201325 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:9444016 (GRCh38)
16:9537873 (GRCh37)
Canonical SPDI:: NC_000016.10:9444015:G:C
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.9444016G>C, NC_000016.9:g.9537873G>C, NR_126397.1:n.190C>G

Select item 14901779884.

rs1490177988 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:9443117 (GRCh38)
16:9536974 (GRCh37)
Canonical SPDI:: NC_000016.10:9443116:C:T
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.9443117C>T, NC_000016.9:g.9536974C>T

Select item 14899387775.

rs1489938777 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 16:9446651 (GRCh38)
16:9540508 (GRCh37)
Canonical SPDI:: NC_000016.10:9446650:A:
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.00029/7 (GnomAD)
HGVS:: NC_000016.10:g.9446651del, NC_000016.9:g.9540508del

Select item 14898665386.

rs1489866538 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:9444774 (GRCh38)
16:9538631 (GRCh37)
Canonical SPDI:: NC_000016.10:9444773:C:T
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.9444774C>T, NC_000016.9:g.9538631C>T

Select item 14897758657.

rs1489775865 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9443875 (GRCh38)
16:9537732 (GRCh37)
Canonical SPDI:: NC_000016.10:9443874:A:G
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.5/21 (SGDP_PRJ)
HGVS:: NC_000016.10:g.9443875A>G, NC_000016.9:g.9537732A>G

Select item 14892887708.

rs1489288770 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:9443370 (GRCh38)
16:9537227 (GRCh37)
Canonical SPDI:: NC_000016.10:9443369:C:G
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.9443370C>G, NC_000016.9:g.9537227C>G

Select item 14890322399.

rs1489032239 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:9446038 (GRCh38)
16:9539895 (GRCh37)
Canonical SPDI:: NC_000016.10:9446037:G:A
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.9446038G>A, NC_000016.9:g.9539895G>A, NR_126349.1:n.423C>T

Select item 148870906310.

rs1488709063 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:9446418 (GRCh38)
16:9540275 (GRCh37)
Canonical SPDI:: NC_000016.10:9446417:G:A
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00004/1 (TOMMO)
A=0.00055/1 (Korea1K)
HGVS:: NC_000016.10:g.9446418G>A, NC_000016.9:g.9540275G>A

Select item 148707473511.

rs1487074735 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTAT [Show Flanks]
Chromosome:: 16:9446673 (GRCh38)
16:9540531 (GRCh37)
Canonical SPDI:: NC_000016.10:9446673:TAT:TATCTAT
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TATCTAT=0./0 (ALFA)
TATC=0.00005/7 (GnomAD)
HGVS:: NC_000016.10:g.9446676_9446677insCTAT, NC_000016.9:g.9540533_9540534insCTAT

Select item 148675288212.

rs1486752882 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTA [Show Flanks]
Chromosome:: 16:9446676 (GRCh38)
16:9540534 (GRCh37)
Canonical SPDI:: NC_000016.10:9446676:TTA:TTACTTA
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTACTTA=0.00059/7 (ALFA)
TTAC=0.001037/144 (GnomAD)
HGVS:: NC_000016.10:g.9446679_9446680insCTTA, NC_000016.9:g.9540536_9540537insCTTA

Select item 148541140513.

rs1485411405 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:9445962 (GRCh38)
16:9539819 (GRCh37)
Canonical SPDI:: NC_000016.10:9445961:A:C
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.9445962A>C, NC_000016.9:g.9539819A>C

Select item 148412349614.

rs1484123496 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9444806 (GRCh38)
16:9538663 (GRCh37)
Canonical SPDI:: NC_000016.10:9444805:A:G
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.9444806A>G, NC_000016.9:g.9538663A>G

Select item 148391816315.

rs1483918163 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9442487 (GRCh38)
16:9536344 (GRCh37)
Canonical SPDI:: NC_000016.10:9442486:A:G
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000016.10:g.9442487A>G, NC_000016.9:g.9536344A>G

Select item 148359889016.

rs1483598890 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:9441799 (GRCh38)
16:9535656 (GRCh37)
Canonical SPDI:: NC_000016.10:9441798:T:C
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000043/6 (GnomAD)
HGVS:: NC_000016.10:g.9441799T>C, NC_000016.9:g.9535656T>C

Select item 148304126117.

rs1483041261 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:9441981 (GRCh38)
16:9535838 (GRCh37)
Canonical SPDI:: NC_000016.10:9441980:G:A
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000034/9 (TOPMED)
HGVS:: NC_000016.10:g.9441981G>A, NC_000016.9:g.9535838G>A

Select item 148278874418.

rs1482788744 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9446472 (GRCh38)
16:9540329 (GRCh37)
Canonical SPDI:: NC_000016.10:9446471:A:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000036/5 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.9446472A>G, NC_000016.9:g.9540329A>G

Select item 148266871719.

rs1482668717 has merged into rs61641680 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTTATTTATTTATTTATTTATTT>-,ATTT,ATTTATTT,ATTTATTTATTT,ATTTATTTATTTATTT,ATTTATTTATTTATTTATTT,ATTTATTTATTTATTTATTTATTTATTT,ATTTATTTATTTATTTATTTATTTATTTATTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT [Show Flanks]
Chromosome:: 16:9446671 (GRCh38)
16:9540528 (GRCh37)
Canonical SPDI:: NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT,NC_000016.10:9446647:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT:TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTATTTATTTATTTATTTATTTATTTATTT=0./0 (ALFA)
-=0.1684/649 (ALSPAC)
HGVS:: NC_000016.10:g.9446651ATTT[5], NC_000016.10:g.9446651ATTT[6], NC_000016.10:g.9446651ATTT[7], NC_000016.10:g.9446651ATTT[8], NC_000016.10:g.9446651ATTT[9], NC_000016.10:g.9446651ATTT[10], NC_000016.10:g.9446651ATTT[12], NC_000016.10:g.9446651ATTT[13], NC_000016.10:g.9446651ATTT[14], NC_000016.10:g.9446651ATTT[15], NC_000016.9:g.9540508ATTT[5], NC_000016.9:g.9540508ATTT[6], NC_000016.9:g.9540508ATTT[7], NC_000016.9:g.9540508ATTT[8], NC_000016.9:g.9540508ATTT[9], NC_000016.9:g.9540508ATTT[10], NC_000016.9:g.9540508ATTT[12], NC_000016.9:g.9540508ATTT[13], NC_000016.9:g.9540508ATTT[14], NC_000016.9:g.9540508ATTT[15]

Select item 148212999320.

rs1482129993 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:9444118 (GRCh38)
16:9537975 (GRCh37)
Canonical SPDI:: NC_000016.10:9444117:C:T
Gene:: LOC101927026 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000016.10:g.9444118C>T, NC_000016.9:g.9537975C>T, NR_126397.1:n.88G>A

<< First< Prev

Page of 87

Next >Last >>

dbSNP

Result Filters

Validation Status

Publication

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 1735

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity