SNP Links for Gene (Select 104326053) - SNP

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Items: 1 to 20 of 3582

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Select item 14910211691.

rs1491021169 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 13:93050816 (GRCh38)
13:93703069 (GRCh37)
Canonical SPDI:: NC_000013.11:93050814:AGA:A
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000058/8 (GnomAD)
-=0.000071/1 (TOMMO)
HGVS:: NC_000013.11:g.93050816_93050817del, NC_000013.10:g.93703069_93703070del

Select item 14907891602.

rs1490789160 [Homo sapiens]

Variant type:: SNV:
Alleles:: GGGA>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14907343383.

rs1490734338 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:93056979 (GRCh38)
13:93709232 (GRCh37)
Canonical SPDI:: NC_000013.11:93056978:T:C
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.93056979T>C, NC_000013.10:g.93709232T>C

Select item 14905943774.

rs1490594377 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 13:93049244 (GRCh38)
13:93701497 (GRCh37)
Canonical SPDI:: NC_000013.11:93049243:A:C,NC_000013.11:93049243:A:G
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.93049244A>C, NC_000013.11:g.93049244A>G, NC_000013.10:g.93701497A>C, NC_000013.10:g.93701497A>G

Select item 14902819525.

rs1490281952 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:93049383 (GRCh38)
13:93701636 (GRCh37)
Canonical SPDI:: NC_000013.11:93049382:T:A
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.93049383T>A, NC_000013.10:g.93701636T>A

Select item 14902676776.

rs1490267677 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:93048403 (GRCh38)
13:93700656 (GRCh37)
Canonical SPDI:: NC_000013.11:93048402:A:G
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.93048403A>G, NC_000013.10:g.93700656A>G

Select item 14897361307.

rs1489736130 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:93054925 (GRCh38)
13:93707178 (GRCh37)
Canonical SPDI:: NC_000013.11:93054924:G:A
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.93054925G>A, NC_000013.10:g.93707178G>A

Select item 14895277138.

rs1489527713 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:93050727 (GRCh38)
13:93702980 (GRCh37)
Canonical SPDI:: NC_000013.11:93050726:A:T
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.93050727A>T, NC_000013.10:g.93702980A>T

Select item 14895043149.

rs1489504314 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:93049407 (GRCh38)
13:93701660 (GRCh37)
Canonical SPDI:: NC_000013.11:93049406:C:T
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.93049407C>T, NC_000013.10:g.93701660C>T

Select item 148945053110.

rs1489450531 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 13:93047384 (GRCh38)
13:93699637 (GRCh37)
Canonical SPDI:: NC_000013.11:93047383:C:G,NC_000013.11:93047383:C:T
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000013.11:g.93047384C>G, NC_000013.11:g.93047384C>T, NC_000013.10:g.93699637C>G, NC_000013.10:g.93699637C>T

Select item 148928029411.

rs1489280294 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCT>- [Show Flanks]
Chromosome:: 13:93057767 (GRCh38)
13:93710020 (GRCh37)
Canonical SPDI:: NC_000013.11:93057764:CTTCT:CT
Gene:: LINC00363 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CT=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.93057767_93057769del, NC_000013.10:g.93710020_93710022del, NR_126360.1:n.152_154del

Select item 148920814312.

rs1489208143 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:93043828 (GRCh38)
13:93696081 (GRCh37)
Canonical SPDI:: NC_000013.11:93043827:G:C
Gene:: LINC00363 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000026/7 (TOPMED)
C=0.000156/1 (1000Genomes)
C=0.001027/3 (KOREAN)
HGVS:: NC_000013.11:g.93043828G>C, NC_000013.10:g.93696081G>C

Select item 148877843113.

rs1488778431 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:93057977 (GRCh38)
13:93710230 (GRCh37)
Canonical SPDI:: NC_000013.11:93057976:T:A
Gene:: LINC00363 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.93057977T>A, NC_000013.10:g.93710230T>A

Select item 148873744514.

rs1488737445 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:93058091 (GRCh38)
13:93710344 (GRCh37)
Canonical SPDI:: NC_000013.11:93058090:G:C
Gene:: LINC00363 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.93058091G>C, NC_000013.10:g.93710344G>C

Select item 148866975215.

rs1488669752 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 13:93045003 (GRCh38)
13:93697256 (GRCh37)
Canonical SPDI:: NC_000013.11:93045002:C:A,NC_000013.11:93045002:C:T
Gene:: LINC00363 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.93045003C>A, NC_000013.11:g.93045003C>T, NC_000013.10:g.93697256C>A, NC_000013.10:g.93697256C>T

Select item 148861809716.

rs1488618097 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:93044083 (GRCh38)
13:93696336 (GRCh37)
Canonical SPDI:: NC_000013.11:93044082:C:T
Gene:: LINC00363 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.93044083C>T, NC_000013.10:g.93696336C>T

Select item 148855090217.

rs1488550902 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:93051074 (GRCh38)
13:93703327 (GRCh37)
Canonical SPDI:: NC_000013.11:93051073:G:A
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000106/2 (TOMMO)
HGVS:: NC_000013.11:g.93051074G>A, NC_000013.10:g.93703327G>A

Select item 148817920518.

rs1488179205 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:93058118 (GRCh38)
13:93710371 (GRCh37)
Canonical SPDI:: NC_000013.11:93058117:A:T
Gene:: LINC00363 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.93058118A>T, NC_000013.10:g.93710371A>T

Select item 148812696019.

rs1488126960 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:93056149 (GRCh38)
13:93708402 (GRCh37)
Canonical SPDI:: NC_000013.11:93056148:G:A
Gene:: LINC00363 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.93056149G>A, NC_000013.10:g.93708402G>A

Select item 148779126420.

rs1487791264 has merged into rs5805782 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 13:93058233 (GRCh38)
13:93710486 (GRCh37)
Canonical SPDI:: NC_000013.11:93058225:AAAAAAAAA:AAAAAAA,NC_000013.11:93058225:AAAAAAAAA:AAAAAAAA,NC_000013.11:93058225:AAAAAAAAA:AAAAAAAAAA,NC_000013.11:93058225:AAAAAAAAA:AAAAAAAAAAA
Gene:: LINC00363 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
A=0.175/7 (GENOME_DK)
A=0.276553/276 (GoNL)
A=0.286667/172 (NorthernSweden)
A=0.308929/1384 (Estonian)
A=0.317852/1225 (ALSPAC)
A=0.328209/1217 (TWINSUK)
A=0.370244/98000 (TOPMED)
A=0.412939/2068 (1000Genomes)
A=0.455786/835 (Korea1K)
A=0.461905/97 (Vietnamese)
-=0.485979/8145 (TOMMO)
HGVS:: NC_000013.11:g.93058233_93058234del, NC_000013.11:g.93058234del, NC_000013.11:g.93058234dup, NC_000013.11:g.93058233_93058234dup, NC_000013.10:g.93710486_93710487del, NC_000013.10:g.93710487del, NC_000013.10:g.93710487dup, NC_000013.10:g.93710486_93710487dup

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