SNP Links for Gene (Select 102724661) - SNP

Links from Gene

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Select item 14915238691.

rs1491523869 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 1:177364638 (GRCh38)
1:177333774 (GRCh37)
Canonical SPDI:: NC_000001.11:177364637:CG:
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000024/3 (GnomAD)
HGVS:: NC_000001.11:g.177364638_177364639del, NC_000001.10:g.177333774_177333775del

Select item 14914485712.

rs1491448571 [Homo sapiens]

Variant type:: INS
Alleles:: ->TT,TTTTTT [Show Flanks]
Chromosome:: 1:177351380 (GRCh38)
1:177320517 (GRCh37)
Canonical SPDI:: NC_000001.11:177351380::TT,NC_000001.11:177351380::TTTTTT
Gene:: LINC01645 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TTTTTT=0./0 (ALFA)
HGVS:: NC_000001.11:g.177351380_177351381insTT, NC_000001.11:g.177351380_177351381insTTTTTT, NC_000001.10:g.177320516_177320517insTT, NC_000001.10:g.177320516_177320517insTTTTTT

Select item 14911166483.

rs1491116648 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 1:177351380 (GRCh38)
1:177320516 (GRCh37)
Canonical SPDI:: NC_000001.11:177351379:AC:
Gene:: LINC01645 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000001.11:g.177351380_177351381del, NC_000001.10:g.177320516_177320517del

Select item 14910722174.

rs1491072217 has merged into rs3066174 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 1:177351760 (GRCh38)
1:177320896 (GRCh37)
Canonical SPDI:: NC_000001.11:177351755:GTGTGT:GTGT,NC_000001.11:177351755:GTGTGT:GTGTGTGT
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGTGT=0.3505/2491 (ALFA)
-=0.0014/3 (1000Genomes)
GT=0.3734/684 (Korea1K)
GT=0.4426/1983 (Estonian)
GT=0.4509/450 (GoNL)
GT=0.4517/1741 (ALSPAC)
GT=0.4583/275 (NorthernSweden)
GT=0.4609/1709 (TWINSUK)
HGVS:: NC_000001.11:g.177351756GT[2], NC_000001.11:g.177351756GT[4], NC_000001.10:g.177320892GT[2], NC_000001.10:g.177320892GT[4]

Select item 14910647035.

rs1491064703 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TA [Show Flanks]
Chromosome:: 1:177351760 (GRCh38)
1:177320897 (GRCh37)
Canonical SPDI:: NC_000001.11:177351760:TA:TATA
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATA=0./0 (ALFA)
TA=0.000004/1 (TOPMED)
TA=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.177351761_177351762dup, NC_000001.10:g.177320897_177320898dup

Select item 14910123276.

rs1491012327 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 1:177352031 (GRCh38)
1:177321167 (GRCh37)
Canonical SPDI:: NC_000001.11:177352029:TAT:T
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000036/1 (GnomAD)
HGVS:: NC_000001.11:g.177352031_177352032del, NC_000001.10:g.177321167_177321168del

Select item 14906340567.

rs1490634056 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:177366678 (GRCh38)
1:177335814 (GRCh37)
Canonical SPDI:: NC_000001.11:177366677:A:G
Gene:: LINC01645 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.177366678A>G, NC_000001.10:g.177335814A>G

Select item 14904773828.

rs1490477382 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 1:177365188 (GRCh38)
1:177334324 (GRCh37)
Canonical SPDI:: NC_000001.11:177365187:AA:A
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.177365189del, NC_000001.10:g.177334325del

Select item 14903050799.

rs1490305079 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:177364427 (GRCh38)
1:177333563 (GRCh37)
Canonical SPDI:: NC_000001.11:177364426:A:C
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.177364427A>C, NC_000001.10:g.177333563A>C

Select item 149014954810.

rs1490149548 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:177364341 (GRCh38)
1:177333477 (GRCh37)
Canonical SPDI:: NC_000001.11:177364340:A:G
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.177364341A>G, NC_000001.10:g.177333477A>G

Select item 149011935811.

rs1490119358 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTT>- [Show Flanks]
Chromosome:: 1:177363254 (GRCh38)
1:177332390 (GRCh37)
Canonical SPDI:: NC_000001.11:177363248:TTGTTGTT:TTGTT
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTGTT=0./0 (ALFA)
-=0.000029/4 (GnomAD)
-=0.000076/20 (TOPMED)
HGVS:: NC_000001.11:g.177363251GTT[1], NC_000001.10:g.177332387GTT[1]

Select item 148995654712.

rs1489956547 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:177363814 (GRCh38)
1:177332950 (GRCh37)
Canonical SPDI:: NC_000001.11:177363813:G:A
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.177363814G>A, NC_000001.10:g.177332950G>A

Select item 148967273213.

rs1489672732 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:177356480 (GRCh38)
1:177325616 (GRCh37)
Canonical SPDI:: NC_000001.11:177356479:C:A
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.177356480C>A, NC_000001.10:g.177325616C>A

Select item 148944167314.

rs1489441673 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:177355937 (GRCh38)
1:177325073 (GRCh37)
Canonical SPDI:: NC_000001.11:177355936:C:G
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000001.11:g.177355937C>G, NC_000001.10:g.177325073C>G

Select item 148910924315.

rs1489109243 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:177364380 (GRCh38)
1:177333516 (GRCh37)
Canonical SPDI:: NC_000001.11:177364379:G:C
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.177364380G>C, NC_000001.10:g.177333516G>C

Select item 148903241816.

rs1489032418 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:177355369 (GRCh38)
1:177324505 (GRCh37)
Canonical SPDI:: NC_000001.11:177355368:C:T
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.177355369C>T, NC_000001.10:g.177324505C>T

Select item 148900851817.

rs1489008518 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:177355507 (GRCh38)
1:177324643 (GRCh37)
Canonical SPDI:: NC_000001.11:177355506:T:C
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.177355507T>C, NC_000001.10:g.177324643T>C

Select item 148881309818.

rs1488813098 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:177361668 (GRCh38)
1:177330804 (GRCh37)
Canonical SPDI:: NC_000001.11:177361667:G:A
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.177361668G>A, NC_000001.10:g.177330804G>A

Select item 148873954719.

rs1488739547 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTGTGTGTGT>- [Show Flanks]
Chromosome:: 1:177351712 (GRCh38)
1:177320848 (GRCh37)
Canonical SPDI:: NC_000001.11:177351705:GTGTGTCTGTGTGTGT:GTGTGT
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGT=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.177351712_177351721del, NC_000001.10:g.177320848_177320857del

Select item 148869452220.

rs1488694522 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:177353978 (GRCh38)
1:177323114 (GRCh37)
Canonical SPDI:: NC_000001.11:177353977:A:G
Gene:: LINC01645 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.177353978A>G, NC_000001.10:g.177323114A>G

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