SNP Links for Gene (Select 102724321) - SNP

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Select item 14909628401.

rs1490962840 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:66921698 (GRCh38)
2:67148830 (GRCh37)
Canonical SPDI:: NC_000002.12:66921697:A:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.66921698A>G, NC_000002.11:g.67148830A>G

Select item 14882293462.

rs1488229346 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:66924343 (GRCh38)
2:67151475 (GRCh37)
Canonical SPDI:: NC_000002.12:66924342:A:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.66924343A>G, NC_000002.11:g.67151475A>G

Select item 14868208053.

rs1486820805 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:66922402 (GRCh38)
2:67149534 (GRCh37)
Canonical SPDI:: NC_000002.12:66922401:T:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.0002/1 (ALFA)
G=0.0002/1 (Estonian)
HGVS:: NC_000002.12:g.66922402T>G, NC_000002.11:g.67149534T>G, NR_110600.1:n.89A>C

Select item 14865898774.

rs1486589877 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:66923832 (GRCh38)
2:67150964 (GRCh37)
Canonical SPDI:: NC_000002.12:66923831:G:A
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.66923832G>A, NC_000002.11:g.67150964G>A

Select item 14861031005.

rs1486103100 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 2:66923752 (GRCh38)
2:67150884 (GRCh37)
Canonical SPDI:: NC_000002.12:66923751:C:
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000002.12:g.66923752del, NC_000002.11:g.67150884del

Select item 14857448596.

rs1485744859 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:66923486 (GRCh38)
2:67150618 (GRCh37)
Canonical SPDI:: NC_000002.12:66923485:A:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000002.12:g.66923486A>G, NC_000002.11:g.67150618A>G

Select item 14842922727.

rs1484292272 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:66922765 (GRCh38)
2:67149897 (GRCh37)
Canonical SPDI:: NC_000002.12:66922764:A:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.66922765A>G, NC_000002.11:g.67149897A>G

Select item 14842313238.

rs1484231323 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:66921985 (GRCh38)
2:67149117 (GRCh37)
Canonical SPDI:: NC_000002.12:66921984:C:T
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.66921985C>T, NC_000002.11:g.67149117C>T

Select item 14837786369.

rs1483778636 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:66922736 (GRCh38)
2:67149868 (GRCh37)
Canonical SPDI:: NC_000002.12:66922735:C:T
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.66922736C>T, NC_000002.11:g.67149868C>T

Select item 148265953510.

rs1482659535 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:66922363 (GRCh38)
2:67149495 (GRCh37)
Canonical SPDI:: NC_000002.12:66922362:C:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.66922363C>G, NC_000002.11:g.67149495C>G, NR_110600.1:n.128G>C

Select item 148224369711.

rs1482243697 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAG>- [Show Flanks]
Chromosome:: 2:66921219 (GRCh38)
2:67148351 (GRCh37)
Canonical SPDI:: NC_000002.12:66921215:AAGAAG:AAG
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGAAG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.66921216AAG[1], NC_000002.11:g.67148348AAG[1]

Select item 148148717312.

rs1481487173 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:66923415 (GRCh38)
2:67150547 (GRCh37)
Canonical SPDI:: NC_000002.12:66923414:G:A
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.66923415G>A, NC_000002.11:g.67150547G>A

Select item 148069658113.

rs1480696581 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:66922927 (GRCh38)
2:67150059 (GRCh37)
Canonical SPDI:: NC_000002.12:66922926:A:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.66922927A>G, NC_000002.11:g.67150059A>G

Select item 147787365414.

rs1477873654 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:66921368 (GRCh38)
2:67148500 (GRCh37)
Canonical SPDI:: NC_000002.12:66921367:C:T
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.66921368C>T, NC_000002.11:g.67148500C>T

Select item 147722694415.

rs1477226944 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:66924330 (GRCh38)
2:67151462 (GRCh37)
Canonical SPDI:: NC_000002.12:66924329:T:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.66924330T>G, NC_000002.11:g.67151462T>G

Select item 147585552916.

rs1475855529 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:66923363 (GRCh38)
2:67150495 (GRCh37)
Canonical SPDI:: NC_000002.12:66923362:T:C
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.00006/1 (TOMMO)
HGVS:: NC_000002.12:g.66923363T>C, NC_000002.11:g.67150495T>C

Select item 147574483617.

rs1475744836 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:66923574 (GRCh38)
2:67150706 (GRCh37)
Canonical SPDI:: NC_000002.12:66923573:T:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000084/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.66923574T>G, NC_000002.11:g.67150706T>G

Select item 147545738918.

rs1475457389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:66923168 (GRCh38)
2:67150300 (GRCh37)
Canonical SPDI:: NC_000002.12:66923167:C:T
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.66923168C>T, NC_000002.11:g.67150300C>T

Select item 147410711819.

rs1474107118 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:66923264 (GRCh38)
2:67150396 (GRCh37)
Canonical SPDI:: NC_000002.12:66923263:C:G
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.66923264C>G, NC_000002.11:g.67150396C>G

Select item 147404920720.

rs1474049207 has merged into rs1456289769 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>-,GGGG [Show Flanks]
Chromosome:: 2:66922434 (GRCh38)
2:67149566 (GRCh37)
Canonical SPDI:: NC_000002.12:66922432:GGG:G,NC_000002.12:66922432:GGG:GGGGG
Gene:: LINC01799 (Varview), LINC01628 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGG=0./0 (ALFA)
-=0.000015/2 (GnomAD)
-=0.000015/4 (TOPMED)
-=0.000245/1 (Estonian)
HGVS:: NC_000002.12:g.66922434_66922435del, NC_000002.12:g.66922434_66922435dup, NC_000002.11:g.67149566_67149567del, NC_000002.11:g.67149566_67149567dup, NR_110600.1:n.57_58del, NR_110600.1:n.57_58dup

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