Links from Gene
Items: 1 to 20 of 2120
1.
rs1490813132 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 2:104874330
(GRCh38)
2:105490788
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104874329:G:T
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
2.
rs1490394180 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 2:104867816
(GRCh38)
2:105484274
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104867815:C:A
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000021/3
(GnomAD)
A=0.000026/7
(TOPMED)
- HGVS:
3.
rs1490187973 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 2:104865515
(GRCh38)
2:105481973
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104865514:G:T
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000447/2
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000446/2
(Estonian)
- HGVS:
4.
rs1489901995 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 2:104868253
(GRCh38)
2:105484711
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104868252:C:T
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
5.
rs1489002513 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 2:104868368
(GRCh38)
2:105484826
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104868367:C:A,NC_000002.12:104868367:C:T
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
T=0.000007/1
(GnomAD_exomes)
- HGVS:
6.
rs1488113475 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C,G
[Show Flanks]
- Chromosome:
- 2:104865099
(GRCh38)
2:105481557
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104865098:A:C,NC_000002.12:104865098:A:G
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- 500B_downstream_variant,downstream_transcript_variant,5_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.00016/1
(1000Genomes)
- HGVS:
7.
rs1487985290 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 2:104870216
(GRCh38)
2:105486674
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104870215:G:A
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000008/2
(TOPMED)
A=0.000014/2
(GnomAD)
- HGVS:
8.
rs1487484779 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 2:104874226
(GRCh38)
2:105490684
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104874225:T:C
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
C=0.000008/2
(TOPMED)
- HGVS:
9.
rs1487310882 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 2:104867805
(GRCh38)
2:105484263
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104867804:C:G,NC_000002.12:104867804:C:T
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0.000066/1
(
ALFA)
T=0.000014/2
(GnomAD)
- HGVS:
10.
rs1486843103 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 2:104870842
(GRCh38)
2:105487300
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104870841:A:T
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000071/1
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
11.
rs1486727203 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 2:104873699
(GRCh38)
2:105490157
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104873698:C:A
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000071/1
(
ALFA)
A=0.000014/2
(GnomAD)
A=0.000045/12
(TOPMED)
A=0.000312/2
(1000Genomes)
A=0.000319/5
(TOMMO)
A=0.001092/2
(Korea1K)
A=0.001369/4
(KOREAN)
- HGVS:
12.
rs1485078389 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 2:104873469
(GRCh38)
2:105489927
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104873468:C:A
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000011/3
(TOPMED)
- HGVS:
13.
rs1485036732 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 2:104871867
(GRCh38)
2:105488325
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104871866:C:A
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
14.
rs1484841291 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 2:104872231
(GRCh38)
2:105488689
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104872230:G:A,NC_000002.12:104872230:G:T
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000015/2
(GnomAD_exomes)
- HGVS:
15.
rs1484312813 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 2:104873034
(GRCh38)
2:105489492
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104873033:C:A
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000008/2
(TOPMED)
- HGVS:
16.
rs1484180295 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 2:104867776
(GRCh38)
2:105484234
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104867775:G:A
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
- HGVS:
17.
rs1484086991 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G
[Show Flanks]
- Chromosome:
- 2:104865187
(GRCh38)
2:105481645
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104865186:C:G
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant,5_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000011/3
(TOPMED)
G=0.000021/3
(GnomAD)
- HGVS:
18.
rs1484047099 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 2:104872182
(GRCh38)
2:105488640
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104872181:C:T
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000011/3
(TOPMED)
- HGVS:
19.
rs1483749190 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 2:104873156
(GRCh38)
2:105489614
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104873155:T:C
- Gene:
- LINC01159 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000014/2
(GnomAD)
C=0.000023/6
(TOPMED)
- HGVS:
20.
rs1483504841 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 2:104865225
(GRCh38)
2:105481683
(GRCh37)
- Canonical SPDI:
- NC_000002.12:104865224:G:A
- Gene:
- LINC01159 (Varview), LOC124908045 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant,5_prime_UTR_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000011/3
(TOPMED)
- HGVS: