SNP Links for Gene (Select 102466877) - SNP

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Links from Gene

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Select item 14906313271.

rs1490631327 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:123365177 (GRCh38)
12:123849724 (GRCh37)
Canonical SPDI:: NC_000012.12:123365176:A:G
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.123365177A>G, NC_000012.11:g.123849724A>G, NG_052874.1:g.5033T>C, NM_018183.4:c.-477T>C, NM_001167856.2:c.-477T>C

Select item 14903972102.

rs1490397210 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:123365711 (GRCh38)
12:123850258 (GRCh37)
Canonical SPDI:: NC_000012.12:123365710:C:T
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.123365711C>T, NC_000012.11:g.123850258C>T, NG_052874.1:g.4499G>A, NR_157805.1:n.376C>T, NR_157806.1:n.355C>T

Select item 14891135513.

rs1489113551 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:123364337 (GRCh38)
12:123848884 (GRCh37)
Canonical SPDI:: NC_000012.12:123364336:C:T
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.123364337C>T, NC_000012.11:g.123848884C>T, NG_052874.1:g.5873G>A

Select item 14885234164.

rs1488523416 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 12:123366505 (GRCh38)
12:123851052 (GRCh37)
Canonical SPDI:: NC_000012.12:123366504:G:A,NC_000012.12:123366504:G:T
Gene:: SBNO1 (Varview), MIR8072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.123366505G>A, NC_000012.12:g.123366505G>T, NC_000012.11:g.123851052G>A, NC_000012.11:g.123851052G>T, NG_052874.1:g.3705C>T, NG_052874.1:g.3705C>A

Select item 14884804855.

rs1488480485 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:123366006 (GRCh38)
12:123850553 (GRCh37)
Canonical SPDI:: NC_000012.12:123366005:A:G
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.123366006A>G, NC_000012.11:g.123850553A>G, NG_052874.1:g.4204T>C

Select item 14881538196.

rs1488153819 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:123365632 (GRCh38)
12:123850179 (GRCh37)
Canonical SPDI:: NC_000012.12:123365631:G:A
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.123365632G>A, NC_000012.11:g.123850179G>A, NG_052874.1:g.4578C>T, NR_157805.1:n.297G>A, NR_157806.1:n.276G>A

Select item 14874084737.

rs1487408473 [Homo sapiens]

Variant type:: DEL
Alleles:: TAAT>- [Show Flanks]
Chromosome:: 12:123366082 (GRCh38)
12:123850629 (GRCh37)
Canonical SPDI:: NC_000012.12:123366081:TAAT:
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000015/4 (TOPMED)
-=0.000021/3 (GnomAD)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000012.12:g.123366082_123366085del, NC_000012.11:g.123850629_123850632del, NG_052874.1:g.4125_4128del

Select item 14844862758.

rs1484486275 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:123366705 (GRCh38)
12:123851252 (GRCh37)
Canonical SPDI:: NC_000012.12:123366704:C:A
Gene:: SBNO1 (Varview), MIR8072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00059/9 (ALFA)
A=0.00131/22 (TOMMO)
A=0.00201/9 (Estonian)
A=0.00274/8 (KOREAN)
A=0.0039/25 (1000Genomes)
HGVS:: NC_000012.12:g.123366705C>A, NC_000012.11:g.123851252C>A, NG_052874.1:g.3505G>T

Select item 14843793619.

rs1484379361 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 12:123364689 (GRCh38)
12:123849236 (GRCh37)
Canonical SPDI:: NC_000012.12:123364688:G:A,NC_000012.12:123364688:G:T
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
T=0.000071/2 (TOMMO)
HGVS:: NC_000012.12:g.123364689G>A, NC_000012.12:g.123364689G>T, NC_000012.11:g.123849236G>A, NC_000012.11:g.123849236G>T, NG_052874.1:g.5521C>T, NG_052874.1:g.5521C>A

Select item 148428831010.

rs1484288310 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 12:123364394 (GRCh38)
12:123848941 (GRCh37)
Canonical SPDI:: NC_000012.12:123364393:C:A,NC_000012.12:123364393:C:T
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.123364394C>A, NC_000012.12:g.123364394C>T, NC_000012.11:g.123848941C>A, NC_000012.11:g.123848941C>T, NG_052874.1:g.5816G>T, NG_052874.1:g.5816G>A

Select item 148327574211.

rs1483275742 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:123364809 (GRCh38)
12:123849356 (GRCh37)
Canonical SPDI:: NC_000012.12:123364808:C:G,NC_000012.12:123364808:C:T
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.123364809C>G, NC_000012.12:g.123364809C>T, NC_000012.11:g.123849356C>G, NC_000012.11:g.123849356C>T, NG_052874.1:g.5401G>C, NG_052874.1:g.5401G>A, NM_018183.5:c.-109G>C, NM_018183.5:c.-109G>A, NM_018183.4:c.-109G>C, NM_018183.4:c.-109G>A, NM_001167856.3:c.-109G>C, NM_001167856.3:c.-109G>A, NM_001167856.2:c.-109G>C, NM_001167856.2:c.-109G>A, NR_107039.1:n.35G>C, NR_107039.1:n.35G>A

Select item 148323284912.

rs1483232849 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148279569613.

rs1482795696 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:123366692 (GRCh38)
12:123851239 (GRCh37)
Canonical SPDI:: NC_000012.12:123366691:C:T
Gene:: SBNO1 (Varview), MIR8072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.123366692C>T, NC_000012.11:g.123851239C>T, NG_052874.1:g.3518G>A

Select item 148138537014.

rs1481385370 [Homo sapiens]

Variant type:: DEL
Alleles:: GCGAAGGCCACC>- [Show Flanks]
Chromosome:: 12:123365186 (GRCh38)
12:123849733 (GRCh37)
Canonical SPDI:: NC_000012.12:123365185:GCGAAGGCCACC:
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.123365186_123365197del, NC_000012.11:g.123849733_123849744del, NG_052874.1:g.5013_5024del, NM_018183.4:c.-497_-486del, NM_001167856.2:c.-497_-486del

Select item 148135919715.

rs1481359197 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:123366712 (GRCh38)
12:123851259 (GRCh37)
Canonical SPDI:: NC_000012.12:123366711:G:C
Gene:: SBNO1 (Varview), MIR8072 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00066/10 (ALFA)
C=0.000023/3 (GnomAD)
C=0.001522/26 (TOMMO)
C=0.002232/10 (Estonian)
C=0.002738/8 (KOREAN)
C=0.003904/25 (1000Genomes)
HGVS:: NC_000012.12:g.123366712G>C, NC_000012.11:g.123851259G>C, NG_052874.1:g.3498C>G

Select item 148133142916.

rs1481331429 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:123365780 (GRCh38)
12:123850327 (GRCh37)
Canonical SPDI:: NC_000012.12:123365779:T:A
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.123365780T>A, NC_000012.11:g.123850327T>A, NG_052874.1:g.4430A>T, NR_157805.1:n.445T>A, NR_157806.1:n.424T>A

Select item 148128506517.

rs1481285065 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 12:123366144 (GRCh38)
12:123850691 (GRCh37)
Canonical SPDI:: NC_000012.12:123366143:T:C,NC_000012.12:123366143:T:G
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.123366144T>C, NC_000012.12:g.123366144T>G, NC_000012.11:g.123850691T>C, NC_000012.11:g.123850691T>G, NG_052874.1:g.4066A>G, NG_052874.1:g.4066A>C

Select item 148107044918.

rs1481070449 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:123364798 (GRCh38)
12:123849345 (GRCh37)
Canonical SPDI:: NC_000012.12:123364797:G:A
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.123364798G>A, NC_000012.11:g.123849345G>A, NG_052874.1:g.5412C>T, NM_018183.5:c.-98C>T, NM_018183.4:c.-98C>T, NM_001167856.3:c.-98C>T, NM_001167856.2:c.-98C>T, NR_107039.1:n.46C>T

Select item 147943484919.

rs1479434849 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:123364640 (GRCh38)
12:123849187 (GRCh37)
Canonical SPDI:: NC_000012.12:123364639:A:T
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.123364640A>T, NC_000012.11:g.123849187A>T, NG_052874.1:g.5570T>A

Select item 147937663820.

rs1479376638 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 12:123364962 (GRCh38)
12:123849510 (GRCh37)
Canonical SPDI:: NC_000012.12:123364962:CCCC:CCCCC
Gene:: SBNO1 (Varview), MIR8072 (Varview), SBNO1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCC=0.000084/1 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000012.12:g.123364966dup, NC_000012.11:g.123849513dup, NG_052874.1:g.5247dup, NM_018183.4:c.-263dup, NM_001167856.2:c.-263dup, NR_157805.1:n.19dup, NR_157806.1:n.19dup