Links from Gene
Items: 1 to 20 of 827
1.
rs1489161921 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 1:120942763
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120942762:G:T
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000071/1
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000011/3
(TOPMED)
T=0.000156/1
(1000Genomes)
- HGVS:
2.
rs1488959709 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G
[Show Flanks]
- Chromosome:
- 1:120941159
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120941158:C:G
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
3.
rs1488152825 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>A,C
[Show Flanks]
- Chromosome:
- 1:120942593
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120942592:T:A,NC_000001.11:120942592:T:C
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
4.
rs1487953345 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 1:120940958
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120940957:A:C
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000071/1
(
ALFA)
C=0.000015/2
(GnomAD)
C=0.000015/4
(TOPMED)
- HGVS:
6.
rs1487676409 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 1:120942400
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120942399:C:A,NC_000001.11:120942399:C:T
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000019/5
(TOPMED)
- HGVS:
8.
rs1486815468 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 1:120942647
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120942646:C:T
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000071/1
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.00003/8
(TOPMED)
- HGVS:
9.
rs1486178465 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 1:120942180
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120942179:G:A
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0./0
(GnomAD)
- HGVS:
10.
rs1486148315 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G
[Show Flanks]
- Chromosome:
- 1:120941547
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120941546:C:G
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
- HGVS:
11.
rs1485832711 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 1:120942447
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120942446:G:A
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
12.
rs1485688238 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 1:120941955
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120941954:T:C
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
13.
rs1484709260 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C,T
[Show Flanks]
- Chromosome:
- 1:120941681
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120941680:G:C,NC_000001.11:120941680:G:T
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.00484/68
(
ALFA)
T=0.000546/1
(Korea1K)
C=0.001093/7
(1000Genomes)
C=0.00357/945
(TOPMED)
C=0.004088/563
(GnomAD)
- HGVS:
15.
rs1484430734 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CTCA
[Show Flanks]
- Chromosome:
- 1:120943180
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120943180:CTCA:CTCACTCA
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
CTCACTCA=0./0
(
ALFA)
CTCA=0.000015/2
(GnomAD)
CTCA=0.000019/5
(TOPMED)
- HGVS:
16.
rs1484191513 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 1:120941038
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120941037:C:T
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- intron_variant,upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000022/3
(GnomAD)
- HGVS:
17.
rs1483712741 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 1:120941409
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120941408:G:A,NC_000001.11:120941408:G:T
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000011/3
(TOPMED)
- HGVS:
18.
rs1483679856 has merged into rs58335480 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 1:120940853
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120940852:T:C
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.239083/2836
(
ALFA)
C=0.16156/4556
(TOMMO)
C=0.240006/29057
(GnomAD)
C=0.246877/1581
(1000Genomes)
- HGVS:
19.
rs1482702912 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 1:120940611
(GRCh38)
1:-1
(GRCh37)
- Canonical SPDI:
- NC_000001.11:120940610:A:G
- Gene:
- LINC00623 (Varview), RNVU1-4 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000024/3
(GnomAD)
- HGVS: