SNP Links for Gene (Select 101929696) - SNP

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Links from Gene

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Select item 14893301761.

rs1489330176 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:139742957 (GRCh38)
5:139122542 (GRCh37)
Canonical SPDI:: NC_000005.10:139742956:T:C
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.139742957T>C, NC_000005.9:g.139122542T>C, XM_017009976.2:c.-1060T>C, XM_017009976.1:c.-1060T>C, XM_047417829.1:c.-2095T>C

Select item 14888763222.

rs1488876322 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:139746072 (GRCh38)
5:139125657 (GRCh37)
Canonical SPDI:: NC_000005.10:139746071:C:T
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.139746072C>T, NC_000005.9:g.139125657C>T, NR_105052.2:n.152G>A, NR_105052.1:n.152G>A

Select item 14885455763.

rs1488545576 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:139742415 (GRCh38)
5:139122000 (GRCh37)
Canonical SPDI:: NC_000005.10:139742414:G:A
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000005.10:g.139742415G>A, NC_000005.9:g.139122000G>A

Select item 14874055174.

rs1487405517 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:139744862 (GRCh38)
5:139124447 (GRCh37)
Canonical SPDI:: NC_000005.10:139744861:C:T
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.139744862C>T, NC_000005.9:g.139124447C>T, XM_017009977.2:c.-190C>T, XM_017009977.1:c.-190C>T, XM_047417829.1:c.-190C>T

Select item 14871878545.

rs1487187854 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 5:139747594 (GRCh38)
5:139127180 (GRCh37)
Canonical SPDI:: NC_000005.10:139747594:GGG:GGGG
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GGGG=0./0 (ALFA)
G=0.00007/2 (TOMMO)
HGVS:: NC_000005.10:g.139747597dup, NC_000005.9:g.139127182dup

Select item 14871159876.

rs1487115987 [Homo sapiens]

Variant type:: DEL
Alleles:: CCGCCAA>- [Show Flanks]
Chromosome:: 5:139747719 (GRCh38)
5:139127304 (GRCh37)
Canonical SPDI:: NC_000005.10:139747718:CCGCCAA:
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.139747719_139747725del, NC_000005.9:g.139127304_139127310del

Select item 14866268307.

rs1486626830 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 5:139746933 (GRCh38)
5:139126518 (GRCh37)
Canonical SPDI:: NC_000005.10:139746932:G:A,NC_000005.10:139746932:G:C,NC_000005.10:139746932:G:T
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00328/6 (Korea1K)
HGVS:: NC_000005.10:g.139746933G>A, NC_000005.10:g.139746933G>C, NC_000005.10:g.139746933G>T, NC_000005.9:g.139126518G>A, NC_000005.9:g.139126518G>C, NC_000005.9:g.139126518G>T

Select item 14862106578.

rs1486210657 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:139741458 (GRCh38)
5:139121043 (GRCh37)
Canonical SPDI:: NC_000005.10:139741457:T:C
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.139741458T>C, NC_000005.9:g.139121043T>C, NR_105052.2:n.590A>G, NR_105052.1:n.590A>G, NR_105053.2:n.303A>G, NR_105053.1:n.303A>G

Select item 14861546179.

rs1486154617 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:139744948 (GRCh38)
5:139124533 (GRCh37)
Canonical SPDI:: NC_000005.10:139744947:A:G
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.139744948A>G, NC_000005.9:g.139124533A>G, XM_017009976.2:c.-104A>G, XM_017009976.1:c.-104A>G, XM_017009977.2:c.-104A>G, XM_017009977.1:c.-104A>G, XM_047417829.1:c.-104A>G

Select item 148561948910.

rs1485619489 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 5:139743590 (GRCh38)
5:139123175 (GRCh37)
Canonical SPDI:: NC_000005.10:139743589:AT:
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000005.10:g.139743590_139743591del, NC_000005.9:g.139123175_139123176del, XM_017009976.2:c.-427_-426del, XM_017009976.1:c.-427_-426del, XM_047417829.1:c.-1462_-1461del

Select item 148522804111.

rs1485228041 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:139741948 (GRCh38)
5:139121533 (GRCh37)
Canonical SPDI:: NC_000005.10:139741947:T:C
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.139741948T>C, NC_000005.9:g.139121533T>C

Select item 148430278512.

rs1484302785 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 5:139747844 (GRCh38)
5:139127429 (GRCh37)
Canonical SPDI:: NC_000005.10:139747843:G:C,NC_000005.10:139747843:G:T
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.139747844G>C, NC_000005.10:g.139747844G>T, NC_000005.9:g.139127429G>C, NC_000005.9:g.139127429G>T

Select item 148403369513.

rs1484033695 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCT>-,CT [Show Flanks]
Chromosome:: 5:139747229 (GRCh38)
5:139126814 (GRCh37)
Canonical SPDI:: NC_000005.10:139747224:CTCTCTCT:CTCT,NC_000005.10:139747224:CTCTCTCT:CTCTCT
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCTCT=0./0 (ALFA)
HGVS:: NC_000005.10:g.139747225CT[2], NC_000005.10:g.139747225CT[3], NC_000005.9:g.139126810CT[2], NC_000005.9:g.139126810CT[3]

Select item 148379462714.

rs1483794627 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:139743684 (GRCh38)
5:139123269 (GRCh37)
Canonical SPDI:: NC_000005.10:139743683:A:G
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.139743684A>G, NC_000005.9:g.139123269A>G, XM_017009976.2:c.-333A>G, XM_017009976.1:c.-333A>G, XM_047417829.1:c.-1368A>G

Select item 148348233615.

rs1483482336 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:139746703 (GRCh38)
5:139126288 (GRCh37)
Canonical SPDI:: NC_000005.10:139746702:C:T
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.139746703C>T, NC_000005.9:g.139126288C>T

Select item 148327587116.

rs1483275871 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:139743784 (GRCh38)
5:139123369 (GRCh37)
Canonical SPDI:: NC_000005.10:139743783:G:A
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.139743784G>A, NC_000005.9:g.139123369G>A, XM_017009976.2:c.-233G>A, XM_017009976.1:c.-233G>A, XM_017009977.2:c.-1268G>A, XM_017009977.1:c.-1268G>A, XM_047417829.1:c.-1268G>A

Select item 148327202817.

rs1483272028 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:139743099 (GRCh38)
5:139122684 (GRCh37)
Canonical SPDI:: NC_000005.10:139743098:C:T
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.139743099C>T, NC_000005.9:g.139122684C>T, XM_017009976.2:c.-918C>T, XM_017009976.1:c.-918C>T, XM_047417829.1:c.-1953C>T

Select item 148304607418.

rs1483046074 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:139748097 (GRCh38)
5:139127682 (GRCh37)
Canonical SPDI:: NC_000005.10:139748096:C:G
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.139748097C>G, NC_000005.9:g.139127682C>G

Select item 148281164719.

rs1482811647 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:139744139 (GRCh38)
5:139123724 (GRCh37)
Canonical SPDI:: NC_000005.10:139744138:A:G
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.139744139A>G, NC_000005.9:g.139123724A>G, XM_017009977.2:c.-913A>G, XM_017009977.1:c.-913A>G, XM_047417829.1:c.-913A>G

Select item 148229108520.

rs1482291085 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:139743565 (GRCh38)
5:139123150 (GRCh37)
Canonical SPDI:: NC_000005.10:139743564:A:G
Gene:: PSD2 (Varview), PSD2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.139743565A>G, NC_000005.9:g.139123150A>G, XM_017009976.2:c.-452A>G, XM_017009976.1:c.-452A>G, XM_047417829.1:c.-1487A>G