SNP Links for Gene (Select 101929651) - SNP

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Links from Gene

Items: 1 to 20 of 1138

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Select item 14908703591.

rs1490870359 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:46446517 (GRCh38)
1:46912189 (GRCh37)
Canonical SPDI:: NC_000001.11:46446516:A:T
Gene:: LINC01398 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000036/5 (GnomAD)
T=0.000057/15 (TOPMED)
HGVS:: NC_000001.11:g.46446517A>T, NC_000001.10:g.46912189A>T

Select item 14900388932.

rs1490038893 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:46450261 (GRCh38)
1:46915933 (GRCh37)
Canonical SPDI:: NC_000001.11:46450260:T:A
Gene:: LINC01398 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000001.11:g.46450261T>A, NC_000001.10:g.46915933T>A

Select item 14874881883.

rs1487488188 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:46446881 (GRCh38)
1:46912553 (GRCh37)
Canonical SPDI:: NC_000001.11:46446880:C:A
Gene:: LINC01398 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46446881C>A, NC_000001.10:g.46912553C>A, NR_121680.1:n.921G>T

Select item 14872694374.

rs1487269437 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:46450897 (GRCh38)
1:46916569 (GRCh37)
Canonical SPDI:: NC_000001.11:46450896:C:A
Gene:: LINC01398 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.46450897C>A, NC_000001.10:g.46916569C>A

Select item 14869355155.

rs1486935515 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:46451583 (GRCh38)
1:46917255 (GRCh37)
Canonical SPDI:: NC_000001.11:46451582:G:A
Gene:: LINC01398 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46451583G>A, NC_000001.10:g.46917255G>A

Select item 14863508106.

rs1486350810 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:46449413 (GRCh38)
1:46915085 (GRCh37)
Canonical SPDI:: NC_000001.11:46449412:G:C
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.46449413G>C, NC_000001.10:g.46915085G>C

Select item 14863061047.

rs1486306104 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:46448977 (GRCh38)
1:46914649 (GRCh37)
Canonical SPDI:: NC_000001.11:46448976:T:C
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46448977T>C, NC_000001.10:g.46914649T>C

Select item 14862200698.

rs1486220069 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:46446765 (GRCh38)
1:46912437 (GRCh37)
Canonical SPDI:: NC_000001.11:46446764:C:G
Gene:: LINC01398 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000214/3 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.46446765C>G, NC_000001.10:g.46912437C>G, NR_121680.1:n.1037G>C

Select item 14853404819.

rs1485340481 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:46449793 (GRCh38)
1:46915465 (GRCh37)
Canonical SPDI:: NC_000001.11:46449792:A:G
Gene:: LINC01398 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.46449793A>G, NC_000001.10:g.46915465A>G

Select item 148501056910.

rs1485010569 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:46449246 (GRCh38)
1:46914918 (GRCh37)
Canonical SPDI:: NC_000001.11:46449245:G:C
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.46449246G>C, NC_000001.10:g.46914918G>C

Select item 148485819111.

rs1484858191 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:46448242 (GRCh38)
1:46913914 (GRCh37)
Canonical SPDI:: NC_000001.11:46448241:C:G
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000389/7 (TOMMO)
HGVS:: NC_000001.11:g.46448242C>G, NC_000001.10:g.46913914C>G

Select item 148472853112.

rs1484728531 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 1:46448551 (GRCh38)
1:46914223 (GRCh37)
Canonical SPDI:: NC_000001.11:46448550:G:C,NC_000001.11:46448550:G:T
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46448551G>C, NC_000001.11:g.46448551G>T, NC_000001.10:g.46914223G>C, NC_000001.10:g.46914223G>T

Select item 148322045413.

rs1483220454 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:46447848 (GRCh38)
1:46913520 (GRCh37)
Canonical SPDI:: NC_000001.11:46447847:G:C
Gene:: LINC01398 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.46447848G>C, NC_000001.10:g.46913520G>C, NR_121680.1:n.260C>G

Select item 148305608614.

rs1483056086 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:46448319 (GRCh38)
1:46913991 (GRCh37)
Canonical SPDI:: NC_000001.11:46448318:C:T
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000318/5 (TOMMO)
HGVS:: NC_000001.11:g.46448319C>T, NC_000001.10:g.46913991C>T

Select item 148295226315.

rs1482952263 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:46447375 (GRCh38)
1:46913047 (GRCh37)
Canonical SPDI:: NC_000001.11:46447374:T:C
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46447375T>C, NC_000001.10:g.46913047T>C

Select item 148290083716.

rs1482900837 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 1:46447278 (GRCh38)
1:46912950 (GRCh37)
Canonical SPDI:: NC_000001.11:46447277:GG:G
Gene:: LINC01398 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46447279del, NC_000001.10:g.46912951del

Select item 148287099917.

rs1482870999 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:46451005 (GRCh38)
1:46916677 (GRCh37)
Canonical SPDI:: NC_000001.11:46451004:G:A
Gene:: LINC01398 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46451005G>A, NC_000001.10:g.46916677G>A

Select item 148274884818.

rs1482748848 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:46447844 (GRCh38)
1:46913517 (GRCh37)
Canonical SPDI:: NC_000001.11:46447844:T:TT
Gene:: LINC01398 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.46447845dup, NC_000001.10:g.46913517dup, NR_121680.1:n.263dup

Select item 148263687819.

rs1482636878 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:46446706 (GRCh38)
1:46912378 (GRCh37)
Canonical SPDI:: NC_000001.11:46446705:C:A
Gene:: LINC01398 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.46446706C>A, NC_000001.10:g.46912378C>A, NR_121680.1:n.1096G>T

Select item 148095325920.

rs1480953259 [Homo sapiens]

Variant type:: DELINS
Alleles:: TACATATGG>- [Show Flanks]
Chromosome:: 1:46447551 (GRCh38)
1:46913223 (GRCh37)
Canonical SPDI:: NC_000001.11:46447548:GGTACATATGG:GG
Gene:: LINC01398 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.46447551_46447559del, NC_000001.10:g.46913223_46913231del, NR_121680.1:n.551_559del