SNP Links for Gene (Select 101929259) - SNP

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Select item 14915451151.

rs1491545115 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 13:45108286 (GRCh38)
13:45682421 (GRCh37)
Canonical SPDI:: NC_000013.11:45108284:TCT:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.45108286_45108287del, NC_000013.10:g.45682421_45682422del

Select item 14912394082.

rs1491239408 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 13:45108285 (GRCh38)
13:45682421 (GRCh37)
Canonical SPDI:: NC_000013.11:45108285:C:CC
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000015/2 (GnomAD)
HGVS:: NC_000013.11:g.45108286dup, NC_000013.10:g.45682421dup

Select item 14910353413.

rs1491035341 has merged into rs1555262357 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>-,CACA [Show Flanks]
Chromosome:: 13:45113009 (GRCh38)
13:45687144 (GRCh37)
Canonical SPDI:: NC_000013.11:45113001:ACACACACA:ACACACA,NC_000013.11:45113001:ACACACACA:ACACACACACA
Gene:: LOC101929259 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACA=0./0 (ALFA)
HGVS:: NC_000013.11:g.45113003CA[3], NC_000013.11:g.45113003CA[5], NC_000013.10:g.45687138CA[3], NC_000013.10:g.45687138CA[5], NR_120424.1:n.1559CA[3], NR_120424.1:n.1559CA[5]

Select item 14907681554.

rs1490768155 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:45111661 (GRCh38)
13:45685796 (GRCh37)
Canonical SPDI:: NC_000013.11:45111660:A:G
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000086/12 (GnomAD)
HGVS:: NC_000013.11:g.45111661A>G, NC_000013.10:g.45685796A>G

Select item 14907320305.

rs1490732030 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:45111828 (GRCh38)
13:45685963 (GRCh37)
Canonical SPDI:: NC_000013.11:45111827:C:A
Gene:: LOC101929259 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.45111828C>A, NC_000013.10:g.45685963C>A, NR_120424.1:n.384C>A

Select item 14907162596.

rs1490716259 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACC>- [Show Flanks]
Chromosome:: 13:45109618 (GRCh38)
13:45683753 (GRCh37)
Canonical SPDI:: NC_000013.11:45109614:ACCACC:ACC
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACCACC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.45109615ACC[1], NC_000013.10:g.45683750ACC[1]

Select item 14905204617.

rs1490520461 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:45111573 (GRCh38)
13:45685708 (GRCh37)
Canonical SPDI:: NC_000013.11:45111572:C:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.45111573C>T, NC_000013.10:g.45685708C>T

Select item 14899137408.

rs1489913740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:45110733 (GRCh38)
13:45684868 (GRCh37)
Canonical SPDI:: NC_000013.11:45110732:A:G
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.45110733A>G, NC_000013.10:g.45684868A>G

Select item 14893438379.

rs1489343837 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:45106261 (GRCh38)
13:45680396 (GRCh37)
Canonical SPDI:: NC_000013.11:45106260:G:A
Gene:: LOC101929259 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.45106261G>A, NC_000013.10:g.45680396G>A

Select item 148924065510.

rs1489240655 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 13:45113704 (GRCh38)
13:45687839 (GRCh37)
Canonical SPDI:: NC_000013.11:45113703:C:G,NC_000013.11:45113703:C:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.45113704C>G, NC_000013.11:g.45113704C>T, NC_000013.10:g.45687839C>G, NC_000013.10:g.45687839C>T

Select item 148909721411.

rs1489097214 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:45112568 (GRCh38)
13:45686703 (GRCh37)
Canonical SPDI:: NC_000013.11:45112567:G:A,NC_000013.11:45112567:G:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000013.11:g.45112568G>A, NC_000013.11:g.45112568G>T, NC_000013.10:g.45686703G>A, NC_000013.10:g.45686703G>T, NR_120424.1:n.1124G>A, NR_120424.1:n.1124G>T

Select item 148896402812.

rs1488964028 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:45112853 (GRCh38)
13:45686988 (GRCh37)
Canonical SPDI:: NC_000013.11:45112852:G:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.45112853G>T, NC_000013.10:g.45686988G>T, NR_120424.1:n.1409G>T

Select item 148865200813.

rs1488652008 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:45109612 (GRCh38)
13:45683747 (GRCh37)
Canonical SPDI:: NC_000013.11:45109611:G:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.45109612G>T, NC_000013.10:g.45683747G>T

Select item 148857869614.

rs1488578696 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTATT>- [Show Flanks]
Chromosome:: 13:45105668 (GRCh38)
13:45679803 (GRCh37)
Canonical SPDI:: NC_000013.11:45105665:TTCTTATT:TT
Gene:: LOC101929259 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.000071/1 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000022/3 (GnomAD)
HGVS:: NC_000013.11:g.45105668_45105673del, NC_000013.10:g.45679803_45679808del

Select item 148847547715.

rs1488475477 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:45105961 (GRCh38)
13:45680096 (GRCh37)
Canonical SPDI:: NC_000013.11:45105960:C:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.45105961C>T, NC_000013.10:g.45680096C>T

Select item 148837242316.

rs1488372423 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:45107416 (GRCh38)
13:45681551 (GRCh37)
Canonical SPDI:: NC_000013.11:45107415:G:A
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.45107416G>A, NC_000013.10:g.45681551G>A

Select item 148800320917.

rs1488003209 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 13:45110522 (GRCh38)
13:45684657 (GRCh37)
Canonical SPDI:: NC_000013.11:45110521:T:
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.45110522del, NC_000013.10:g.45684657del

Select item 148787447018.

rs1487874470 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:45107543 (GRCh38)
13:45681678 (GRCh37)
Canonical SPDI:: NC_000013.11:45107542:T:C
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000013.11:g.45107543T>C, NC_000013.10:g.45681678T>C

Select item 148783500819.

rs1487835008 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:45106932 (GRCh38)
13:45681067 (GRCh37)
Canonical SPDI:: NC_000013.11:45106931:C:G
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.45106932C>G, NC_000013.10:g.45681067C>G

Select item 148728131320.

rs1487281313 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:45111007 (GRCh38)
13:45685142 (GRCh37)
Canonical SPDI:: NC_000013.11:45111006:A:T
Gene:: LOC101929259 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.45111007A>T, NC_000013.10:g.45685142A>T

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