SNP Links for Gene (Select 101929247) - SNP

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Items: 1 to 20 of 6035

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Select item 14913733391.

rs1491373339 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 9:3183794 (GRCh38)
9:3183794 (GRCh37)
Canonical SPDI:: NC_000009.12:3183793:TT:
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.3034/1125 (TWINSUK)
-=0.3389/1306 (ALSPAC)
HGVS:: NC_000009.12:g.3183794_3183795del, NC_000009.11:g.3183794_3183795del

Select item 14911291972.

rs1491129197 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 9:3184685 (GRCh38)
9:3184685 (GRCh37)
Canonical SPDI:: NC_000009.12:3184684:AA:
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000029/4 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000009.12:g.3184685_3184686del, NC_000009.11:g.3184685_3184686del

Select item 14909434473.

rs1490943447 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:3190379 (GRCh38)
9:3190379 (GRCh37)
Canonical SPDI:: NC_000009.12:3190378:G:A
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000035/1 (TOMMO)
A=0.000045/12 (TOPMED)
A=0.000071/10 (GnomAD)
HGVS:: NC_000009.12:g.3190379G>A, NC_000009.11:g.3190379G>A

Select item 14905485624.

rs1490548562 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTATAC [Show Flanks]
Chromosome:: 9:3195512 (GRCh38)
9:3195513 (GRCh37)
Canonical SPDI:: NC_000009.12:3195512:ACCTATAC:ACCTATACCTATAC
Gene:: LINC01231 (Varview), LOC105375959 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACCTATACCTATAC=0./0 (ALFA)
ACCTAT=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.3195515_3195520dup, NC_000009.11:g.3195515_3195520dup

Select item 14904531395.

rs1490453139 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:3190026 (GRCh38)
9:3190026 (GRCh37)
Canonical SPDI:: NC_000009.12:3190025:G:A,NC_000009.12:3190025:G:T
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.3190026G>A, NC_000009.12:g.3190026G>T, NC_000009.11:g.3190026G>A, NC_000009.11:g.3190026G>T

Select item 14901591436.

rs1490159143 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:3183950 (GRCh38)
9:3183950 (GRCh37)
Canonical SPDI:: NC_000009.12:3183949:T:C
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.3183950T>C, NC_000009.11:g.3183950T>C

Select item 14899416697.

rs1489941669 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 9:3200257 (GRCh38)
9:3200257 (GRCh37)
Canonical SPDI:: NC_000009.12:3200256:GGG:GG
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.3200259del, NC_000009.11:g.3200259del

Select item 14899287468.

rs1489928746 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:3183185 (GRCh38)
9:3183185 (GRCh37)
Canonical SPDI:: NC_000009.12:3183184:C:T
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.3183185C>T, NC_000009.11:g.3183185C>T

Select item 14898837999.

rs1489883799 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 9:3180759 (GRCh38)
9:3180759 (GRCh37)
Canonical SPDI:: NC_000009.12:3180758:C:A,NC_000009.12:3180758:C:G,NC_000009.12:3180758:C:T
Gene:: LINC01231 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.3180759C>A, NC_000009.12:g.3180759C>G, NC_000009.12:g.3180759C>T, NC_000009.11:g.3180759C>A, NC_000009.11:g.3180759C>G, NC_000009.11:g.3180759C>T

Select item 148983689610.

rs1489836896 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:3194369 (GRCh38)
9:3194369 (GRCh37)
Canonical SPDI:: NC_000009.12:3194368:T:C
Gene:: LINC01231 (Varview), LOC105375959 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.3194369T>C, NC_000009.11:g.3194369T>C

Select item 148977478911.

rs1489774789 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:3192805 (GRCh38)
9:3192805 (GRCh37)
Canonical SPDI:: NC_000009.12:3192804:T:C
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.3192805T>C, NC_000009.11:g.3192805T>C

Select item 148970092412.

rs1489700924 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:3180821 (GRCh38)
9:3180821 (GRCh37)
Canonical SPDI:: NC_000009.12:3180820:T:C
Gene:: LINC01231 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.3180821T>C, NC_000009.11:g.3180821T>C

Select item 148966956113.

rs1489669561 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:3180030 (GRCh38)
9:3180030 (GRCh37)
Canonical SPDI:: NC_000009.12:3180029:C:T
Gene:: LINC01231 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000009.12:g.3180030C>T, NC_000009.11:g.3180030C>T

Select item 148956982614.

rs1489569826 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:3183106 (GRCh38)
9:3183106 (GRCh37)
Canonical SPDI:: NC_000009.12:3183105:T:C
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.3183106T>C, NC_000009.11:g.3183106T>C

Select item 148928450215.

rs1489284502 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:3200250 (GRCh38)
9:3200250 (GRCh37)
Canonical SPDI:: NC_000009.12:3200249:G:A,NC_000009.12:3200249:G:C
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00006/1 (TOMMO)
HGVS:: NC_000009.12:g.3200250G>A, NC_000009.12:g.3200250G>C, NC_000009.11:g.3200250G>A, NC_000009.11:g.3200250G>C

Select item 148922922716.

rs1489229227 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:3185271 (GRCh38)
9:3185271 (GRCh37)
Canonical SPDI:: NC_000009.12:3185270:A:C
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.3185271A>C, NC_000009.11:g.3185271A>C

Select item 148910095417.

rs1489100954 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:3197314 (GRCh38)
9:3197314 (GRCh37)
Canonical SPDI:: NC_000009.12:3197313:G:T
Gene:: LINC01231 (Varview), LOC105375959 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.3197314G>T, NC_000009.11:g.3197314G>T

Select item 148899948118.

rs1488999481 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:3196575 (GRCh38)
9:3196575 (GRCh37)
Canonical SPDI:: NC_000009.12:3196574:G:C
Gene:: LINC01231 (Varview), LOC105375959 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.3196575G>C, NC_000009.11:g.3196575G>C

Select item 148897368719.

rs1488973687 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:3183483 (GRCh38)
9:3183483 (GRCh37)
Canonical SPDI:: NC_000009.12:3183482:T:G
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
G=0.000312/2 (1000Genomes)
HGVS:: NC_000009.12:g.3183483T>G, NC_000009.11:g.3183483T>G

Select item 148885176720.

rs1488851767 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:3185729 (GRCh38)
9:3185729 (GRCh37)
Canonical SPDI:: NC_000009.12:3185728:G:A
Gene:: LINC01231 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.3185729G>A, NC_000009.11:g.3185729G>A

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