SNP Links for Gene (Select 101928837) - SNP

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Links from Gene

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Select item 14915750181.

rs1491575018 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:76784745 (GRCh38)
11:76495790 (GRCh37)
Canonical SPDI:: NC_000011.10:76784745:T:TT
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.00007/1 (ALFA)
T=0.000018/2 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.76784746dup, NC_000011.9:g.76495790dup

Select item 14912051702.

rs1491205170 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:76784747 (GRCh38)
11:76495792 (GRCh37)
Canonical SPDI:: NC_000011.10:76784747::T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000011.10:g.76784747_76784748insT, NC_000011.9:g.76495791_76495792insT

Select item 14910899853.

rs1491089985 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>-,TGTG [Show Flanks]
Chromosome:: 11:76784746 (GRCh38)
11:76495790 (GRCh37)
Canonical SPDI:: NC_000011.10:76784744:GTG:G,NC_000011.10:76784744:GTG:GTGTG
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GTGTG=0./0 (ALFA)
HGVS:: NC_000011.10:g.76784746_76784747del, NC_000011.10:g.76784746_76784747dup, NC_000011.9:g.76495790_76495791del, NC_000011.9:g.76495790_76495791dup

Select item 14910417884.

rs1491041788 has merged into rs200701601 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT [Show Flanks]
Chromosome:: 11:76782575 (GRCh38)
11:76493619 (GRCh37)
Canonical SPDI:: NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:76782563:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000011.10:g.76782575_76782578del, NC_000011.10:g.76782576_76782578del, NC_000011.10:g.76782577_76782578del, NC_000011.10:g.76782578del, NC_000011.10:g.76782578dup, NC_000011.10:g.76782577_76782578dup, NC_000011.10:g.76782576_76782578dup, NC_000011.10:g.76782575_76782578dup, NC_000011.9:g.76493619_76493622del, NC_000011.9:g.76493620_76493622del, NC_000011.9:g.76493621_76493622del, NC_000011.9:g.76493622del, NC_000011.9:g.76493622dup, NC_000011.9:g.76493621_76493622dup, NC_000011.9:g.76493620_76493622dup, NC_000011.9:g.76493619_76493622dup

Select item 14908352005.

rs1490835200 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:76782472 (GRCh38)
11:76493516 (GRCh37)
Canonical SPDI:: NC_000011.10:76782471:C:T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000011.10:g.76782472C>T, NC_000011.9:g.76493516C>T

Select item 14903460856.

rs1490346085 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:76782832 (GRCh38)
11:76493876 (GRCh37)
Canonical SPDI:: NC_000011.10:76782831:C:T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.76782832C>T, NC_000011.9:g.76493876C>T, NR_120561.1:n.97G>A, NR_120562.1:n.85G>A

Select item 14889677287.

rs1488967728 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:76783456 (GRCh38)
11:76494500 (GRCh37)
Canonical SPDI:: NC_000011.10:76783455:C:G
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.76783456C>G, NC_000011.9:g.76494500C>G, XM_047426726.1:c.-838C>G

Select item 14884541018.

rs1488454101 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:76782340 (GRCh38)
11:76493384 (GRCh37)
Canonical SPDI:: NC_000011.10:76782339:C:T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,downstream_transcript_variant,5_prime_UTR_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.76782340C>T, NC_000011.9:g.76493384C>T, NM_001258210.2:c.-102C>T, NM_001258210.1:c.-102C>T

Select item 14883188179.

rs1488318817 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:76784149 (GRCh38)
11:76495193 (GRCh37)
Canonical SPDI:: NC_000011.10:76784148:G:A
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.76784149G>A, NC_000011.9:g.76495193G>A, NM_001318478.2:c.-225G>A, NM_001318478.1:c.-225G>A, NM_001318479.2:c.-36G>A, NM_001318479.1:c.-36G>A, XM_047426726.1:c.-145G>A

Select item 148765027410.

rs1487650274 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:76784462 (GRCh38)
11:76495506 (GRCh37)
Canonical SPDI:: NC_000011.10:76784461:T:G
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.76784462T>G, NC_000011.9:g.76495506T>G

Select item 148763010811.

rs1487630108 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:76783370 (GRCh38)
11:76494414 (GRCh37)
Canonical SPDI:: NC_000011.10:76783369:G:C
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.76783370G>C, NC_000011.9:g.76494414G>C, NM_015516.4:c.-43G>C, NM_015516.3:c.-43G>C, XM_047426726.1:c.-924G>C

Select item 148463109312.

rs1484631093 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:76784494 (GRCh38)
11:76495538 (GRCh37)
Canonical SPDI:: NC_000011.10:76784493:C:T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.76784494C>T, NC_000011.9:g.76495538C>T

Select item 148459996213.

rs1484599962 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:76782813 (GRCh38)
11:76493857 (GRCh37)
Canonical SPDI:: NC_000011.10:76782812:A:C
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.76782813A>C, NC_000011.9:g.76493857A>C, NR_120561.1:n.116T>G, NR_120562.1:n.104T>G

Select item 148445918214.

rs1484459182 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 11:76782619 (GRCh38)
11:76493663 (GRCh37)
Canonical SPDI:: NC_000011.10:76782618:G:C,NC_000011.10:76782618:G:T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
C=0.000106/3 (TOMMO)
HGVS:: NC_000011.10:g.76782619G>C, NC_000011.10:g.76782619G>T, NC_000011.9:g.76493663G>C, NC_000011.9:g.76493663G>T, NR_120561.1:n.310C>G, NR_120561.1:n.310C>A, NR_120562.1:n.298C>G, NR_120562.1:n.298C>A

Select item 148360256715.

rs1483602567 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:76784282 (GRCh38)
11:76495326 (GRCh37)
Canonical SPDI:: NC_000011.10:76784281:T:C
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.76784282T>C, NC_000011.9:g.76495326T>C, NM_001318478.2:c.-92T>C, NM_001318478.1:c.-92T>C, XM_047426726.1:c.-12T>C

Select item 148266029416.

rs1482660294 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:76784939 (GRCh38)
11:76495983 (GRCh37)
Canonical SPDI:: NC_000011.10:76784938:T:G
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.76784939T>G, NC_000011.9:g.76495983T>G

Select item 148154182717.

rs1481541827 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:76784823 (GRCh38)
11:76495867 (GRCh37)
Canonical SPDI:: NC_000011.10:76784822:C:T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.76784823C>T, NC_000011.9:g.76495867C>T

Select item 148049656518.

rs1480496565 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:76784700 (GRCh38)
11:76495744 (GRCh37)
Canonical SPDI:: NC_000011.10:76784699:C:T
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.76784700C>T, NC_000011.9:g.76495744C>T

Select item 147938333219.

rs1479383332 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCCGCGGCCGG>- [Show Flanks]
Chromosome:: 11:76783348 (GRCh38)
11:76494392 (GRCh37)
Canonical SPDI:: NC_000011.10:76783345:GGCCCGCGGCCGG:GG
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.76783348_76783358del, NC_000011.9:g.76494392_76494402del

Select item 147867008520.

rs1478670085 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 11:76783054 (GRCh38)
11:76494098 (GRCh37)
Canonical SPDI:: NC_000011.10:76783053:GGGG:GGG
Gene:: TSKU (Varview), TSKU-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.76783057del, NC_000011.9:g.76494101del, NR_120561.1:n.9del, NR_120562.1:n.9del