SNP Links for Gene (Select 101928807) - SNP

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Links from Gene

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Select item 14912755951.

rs1491275595 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AAGAAAA [Show Flanks]
Chromosome:: 7:132259481 (GRCh38)
7:131944241 (GRCh37)
Canonical SPDI:: NC_000007.14:132259481:GAAAAAAGAAAA:GAAAAAAGAAAAAAGAAAA
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAAAAAAGAAAAAAGAAAA=0./0 (ALFA)
GAAAAAA=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.132259487_132259493dup, NC_000007.13:g.131944246_131944252dup

Select item 14905936412.

rs1490593641 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:132259572 (GRCh38)
7:131944331 (GRCh37)
Canonical SPDI:: NC_000007.14:132259571:G:C
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.132259572G>C, NC_000007.13:g.131944331G>C

Select item 14905575553.

rs1490557555 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 7:132260610 (GRCh38)
7:131945369 (GRCh37)
Canonical SPDI:: NC_000007.14:132260609:C:A,NC_000007.14:132260609:C:G
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0./0 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.132260610C>A, NC_000007.14:g.132260610C>G, NC_000007.13:g.131945369C>A, NC_000007.13:g.131945369C>G

Select item 14903371114.

rs1490337111 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:132260542 (GRCh38)
7:131945301 (GRCh37)
Canonical SPDI:: NC_000007.14:132260541:G:A
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00007/1 (ALFA)
HGVS:: NC_000007.14:g.132260542G>A, NC_000007.13:g.131945301G>A

Select item 14902022945.

rs1490202294 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:132258991 (GRCh38)
7:131943750 (GRCh37)
Canonical SPDI:: NC_000007.14:132258990:C:T
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.132258991C>T, NC_000007.13:g.131943750C>T

Select item 14891038136.

rs1489103813 has merged into rs1306968226 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 7:132258898 (GRCh38)
7:131943657 (GRCh37)
Canonical SPDI:: NC_000007.14:132258897:TTT:TT,NC_000007.14:132258897:TTT:TTTT
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.132258900del, NC_000007.14:g.132258900dup, NC_000007.13:g.131943659del, NC_000007.13:g.131943659dup

Select item 14888289397.

rs1488828939 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:132260784 (GRCh38)
7:131945543 (GRCh37)
Canonical SPDI:: NC_000007.14:132260783:G:C
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000034/9 (TOPMED)
C=0.000035/1 (TOMMO)
C=0.000684/2 (KOREAN)
HGVS:: NC_000007.14:g.132260784G>C, NC_000007.13:g.131945543G>C

Select item 14883402558.

rs1488340255 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:132260675 (GRCh38)
7:131945434 (GRCh37)
Canonical SPDI:: NC_000007.14:132260674:T:A
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00074/12 (ALFA)
HGVS:: NC_000007.14:g.132260675T>A, NC_000007.13:g.131945434T>A

Select item 14881830629.

rs1488183062 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:132262825 (GRCh38)
7:131947584 (GRCh37)
Canonical SPDI:: NC_000007.14:132262824:G:A
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000084/1 (ALFA)
A=0.000043/6 (GnomAD)
A=0.000057/15 (TOPMED)
HGVS:: NC_000007.14:g.132262825G>A, NC_000007.13:g.131947584G>A

Select item 148814078710.

rs1488140787 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:132264134 (GRCh38)
7:131948893 (GRCh37)
Canonical SPDI:: NC_000007.14:132264133:T:A
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
HGVS:: NC_000007.14:g.132264134T>A, NC_000007.13:g.131948893T>A, NR_134565.1:n.311T>A

Select item 148687656111.

rs1486876561 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:132259124 (GRCh38)
7:131943883 (GRCh37)
Canonical SPDI:: NC_000007.14:132259123:G:C
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000142/2 (TOMMO)
C=0.000684/2 (KOREAN)
HGVS:: NC_000007.14:g.132259124G>C, NC_000007.13:g.131943883G>C

Select item 148598665212.

rs1485986652 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:132263633 (GRCh38)
7:131948392 (GRCh37)
Canonical SPDI:: NC_000007.14:132263632:G:A,NC_000007.14:132263632:G:C
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.132263633G>A, NC_000007.14:g.132263633G>C, NC_000007.13:g.131948392G>A, NC_000007.13:g.131948392G>C

Select item 148595904013.

rs1485959040 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:132263513 (GRCh38)
7:131948272 (GRCh37)
Canonical SPDI:: NC_000007.14:132263512:T:C
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.132263513T>C, NC_000007.13:g.131948272T>C

Select item 148575923414.

rs1485759234 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:132262772 (GRCh38)
7:131947531 (GRCh37)
Canonical SPDI:: NC_000007.14:132262771:G:A,NC_000007.14:132262771:G:T
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.132262772G>A, NC_000007.14:g.132262772G>T, NC_000007.13:g.131947531G>A, NC_000007.13:g.131947531G>T

Select item 148478069115.

rs1484780691 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:132262317 (GRCh38)
7:131947076 (GRCh37)
Canonical SPDI:: NC_000007.14:132262316:A:G
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.132262317A>G, NC_000007.13:g.131947076A>G

Select item 148420012716.

rs1484200127 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:132260510 (GRCh38)
7:131945269 (GRCh37)
Canonical SPDI:: NC_000007.14:132260509:A:G
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.132260510A>G, NC_000007.13:g.131945269A>G

Select item 148404182517.

rs1484041825 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:132260264 (GRCh38)
7:131945023 (GRCh37)
Canonical SPDI:: NC_000007.14:132260263:C:A
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00005/7 (GnomAD)
A=0.000098/26 (TOPMED)
A=0.000177/3 (TOMMO)
A=0.000312/2 (1000Genomes)
A=0.001711/5 (KOREAN)
HGVS:: NC_000007.14:g.132260264C>A, NC_000007.13:g.131945023C>A

Select item 148399906818.

rs1483999068 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:132261479 (GRCh38)
7:131946238 (GRCh37)
Canonical SPDI:: NC_000007.14:132261478:A:G
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000007.14:g.132261479A>G, NC_000007.13:g.131946238A>G, NR_134565.1:n.161A>G

Select item 148395085919.

rs1483950859 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 7:132259464 (GRCh38)
7:131944223 (GRCh37)
Canonical SPDI:: NC_000007.14:132259463:A:G,NC_000007.14:132259463:A:T
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.132259464A>G, NC_000007.14:g.132259464A>T, NC_000007.13:g.131944223A>G, NC_000007.13:g.131944223A>T

Select item 148353291020.

rs1483532910 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:132264658 (GRCh38)
7:131949417 (GRCh37)
Canonical SPDI:: NC_000007.14:132264657:C:T
Gene:: PLXNA4 (Varview), LOC101928807 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.132264658C>T, NC_000007.13:g.131949417C>T