SNP Links for Gene (Select 101928795) - SNP

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Select item 14912282041.

rs1491228204 has merged into rs5883835 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 7:42669053 (GRCh38)
7:42708652 (GRCh37)
Canonical SPDI:: NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000007.14:42669043:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000007.14:g.42669053_42669065del, NC_000007.14:g.42669054_42669065del, NC_000007.14:g.42669055_42669065del, NC_000007.14:g.42669056_42669065del, NC_000007.14:g.42669057_42669065del, NC_000007.14:g.42669058_42669065del, NC_000007.14:g.42669059_42669065del, NC_000007.14:g.42669062_42669065del, NC_000007.14:g.42669063_42669065del, NC_000007.14:g.42669064_42669065del, NC_000007.14:g.42669065del, NC_000007.14:g.42669065dup, NC_000007.14:g.42669064_42669065dup, NC_000007.14:g.42669063_42669065dup, NC_000007.14:g.42669062_42669065dup, NC_000007.14:g.42669061_42669065dup, NC_000007.14:g.42669060_42669065dup, NC_000007.14:g.42669046_42669065dup, NC_000007.13:g.42708652_42708664del, NC_000007.13:g.42708653_42708664del, NC_000007.13:g.42708654_42708664del, NC_000007.13:g.42708655_42708664del, NC_000007.13:g.42708656_42708664del, NC_000007.13:g.42708657_42708664del, NC_000007.13:g.42708658_42708664del, NC_000007.13:g.42708661_42708664del, NC_000007.13:g.42708662_42708664del, NC_000007.13:g.42708663_42708664del, NC_000007.13:g.42708664del, NC_000007.13:g.42708664dup, NC_000007.13:g.42708663_42708664dup, NC_000007.13:g.42708662_42708664dup, NC_000007.13:g.42708661_42708664dup, NC_000007.13:g.42708660_42708664dup, NC_000007.13:g.42708659_42708664dup, NC_000007.13:g.42708645_42708664dup

Select item 14911590512.

rs1491159051 has merged into rs143551738 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTATCTATCTAT>-,CTAT,CTATCTAT,CTATCTATCTATCTAT,CTATCTATCTATCTATCTAT,CTATCTATCTATCTATCTATCTAT,CTATCTATCTATCTATCTATCTATCTAT [Show Flanks]
Chromosome:: 7:42701355 (GRCh38)
7:42740954 (GRCh37)
Canonical SPDI:: NC_000007.14:42701339:TATCTATCTATCTATCTATCTATCTAT:TATCTATCTATCTAT,NC_000007.14:42701339:TATCTATCTATCTATCTATCTATCTAT:TATCTATCTATCTATCTAT,NC_000007.14:42701339:TATCTATCTATCTATCTATCTATCTAT:TATCTATCTATCTATCTATCTAT,NC_000007.14:42701339:TATCTATCTATCTATCTATCTATCTAT:TATCTATCTATCTATCTATCTATCTATCTAT,NC_000007.14:42701339:TATCTATCTATCTATCTATCTATCTAT:TATCTATCTATCTATCTATCTATCTATCTATCTAT,NC_000007.14:42701339:TATCTATCTATCTATCTATCTATCTAT:TATCTATCTATCTATCTATCTATCTATCTATCTATCTAT,NC_000007.14:42701339:TATCTATCTATCTATCTATCTATCTAT:TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATCTATCTATCTATCTATCTATCTATCTATCTAT=0./0 (ALFA)
TATC=0.025/1 (GENOME_DK)
-=0.03241/7 (Vietnamese)
HGVS:: NC_000007.14:g.42701343CTAT[3], NC_000007.14:g.42701343CTAT[4], NC_000007.14:g.42701343CTAT[5], NC_000007.14:g.42701343CTAT[7], NC_000007.14:g.42701343CTAT[8], NC_000007.14:g.42701343CTAT[9], NC_000007.14:g.42701343CTAT[10], NC_000007.13:g.42740942CTAT[3], NC_000007.13:g.42740942CTAT[4], NC_000007.13:g.42740942CTAT[5], NC_000007.13:g.42740942CTAT[7], NC_000007.13:g.42740942CTAT[8], NC_000007.13:g.42740942CTAT[9], NC_000007.13:g.42740942CTAT[10]

Select item 14911250353.

rs1491125035 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 7:42669043 (GRCh38)
7:42708642 (GRCh37)
Canonical SPDI:: NC_000007.14:42669042:CA:
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00051/6 (ALFA)
HGVS:: NC_000007.14:g.42669043_42669044del, NC_000007.13:g.42708642_42708643del

Select item 14908412924.

rs1490841292 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:42684050 (GRCh38)
7:42723649 (GRCh37)
Canonical SPDI:: NC_000007.14:42684049:A:T
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.42684050A>T, NC_000007.13:g.42723649A>T

Select item 14908359865.

rs1490835986 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:42685836 (GRCh38)
7:42725435 (GRCh37)
Canonical SPDI:: NC_000007.14:42685835:G:A
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000142/2 (TOMMO)
HGVS:: NC_000007.14:g.42685836G>A, NC_000007.13:g.42725435G>A

Select item 14907242706.

rs1490724270 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:42688051 (GRCh38)
7:42727650 (GRCh37)
Canonical SPDI:: NC_000007.14:42688050:G:A
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.42688051G>A, NC_000007.13:g.42727650G>A

Select item 14906340377.

rs1490634037 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:42701328 (GRCh38)
7:42740927 (GRCh37)
Canonical SPDI:: NC_000007.14:42701327:A:G
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.42701328A>G, NC_000007.13:g.42740927A>G

Select item 14905924878.

rs1490592487 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:42674670 (GRCh38)
7:42714269 (GRCh37)
Canonical SPDI:: NC_000007.14:42674669:G:T
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.42674670G>T, NC_000007.13:g.42714269G>T

Select item 14905639419.

rs1490563941 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:42686977 (GRCh38)
7:42726576 (GRCh37)
Canonical SPDI:: NC_000007.14:42686976:G:A
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.014019/3 (Vietnamese)
HGVS:: NC_000007.14:g.42686977G>A, NC_000007.13:g.42726576G>A

Select item 149051348010.

rs1490513480 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:42693152 (GRCh38)
7:42732751 (GRCh37)
Canonical SPDI:: NC_000007.14:42693151:G:A
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.42693152G>A, NC_000007.13:g.42732751G>A

Select item 149044428711.

rs1490444287 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:42675845 (GRCh38)
7:42715444 (GRCh37)
Canonical SPDI:: NC_000007.14:42675844:G:T
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.42675845G>T, NC_000007.13:g.42715444G>T

Select item 149037068212.

rs1490370682 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:42704310 (GRCh38)
7:42743909 (GRCh37)
Canonical SPDI:: NC_000007.14:42704309:G:A,NC_000007.14:42704309:G:T
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.42704310G>A, NC_000007.14:g.42704310G>T, NC_000007.13:g.42743909G>A, NC_000007.13:g.42743909G>T

Select item 149035975113.

rs1490359751 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:42667572 (GRCh38)
7:42707171 (GRCh37)
Canonical SPDI:: NC_000007.14:42667571:G:A
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000216/4 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000036/5 (GnomAD)
A=0.000446/2 (Estonian)
HGVS:: NC_000007.14:g.42667572G>A, NC_000007.13:g.42707171G>A

Select item 149034585014.

rs1490345850 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:42692683 (GRCh38)
7:42732282 (GRCh37)
Canonical SPDI:: NC_000007.14:42692682:T:C
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.42692683T>C, NC_000007.13:g.42732282T>C

Select item 149030713515.

rs1490307135 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:42664187 (GRCh38)
7:42703786 (GRCh37)
Canonical SPDI:: NC_000007.14:42664186:A:T
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.42664187A>T, NC_000007.13:g.42703786A>T

Select item 149027894716.

rs1490278947 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:42691666 (GRCh38)
7:42731265 (GRCh37)
Canonical SPDI:: NC_000007.14:42691665:A:T
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.42691666A>T, NC_000007.13:g.42731265A>T

Select item 149021486017.

rs1490214860 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:42707367 (GRCh38)
7:42746966 (GRCh37)
Canonical SPDI:: NC_000007.14:42707366:C:T
Gene:: LINC01448 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.42707367C>T, NC_000007.13:g.42746966C>T

Select item 149016201518.

rs1490162015 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:42705549 (GRCh38)
7:42745148 (GRCh37)
Canonical SPDI:: NC_000007.14:42705548:A:G
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.001062/18 (TOMMO)
HGVS:: NC_000007.14:g.42705549A>G, NC_000007.13:g.42745148A>G

Select item 149016136719.

rs1490161367 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:42683573 (GRCh38)
7:42723172 (GRCh37)
Canonical SPDI:: NC_000007.14:42683572:T:C,NC_000007.14:42683572:T:G
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.42683573T>C, NC_000007.14:g.42683573T>G, NC_000007.13:g.42723172T>C, NC_000007.13:g.42723172T>G

Select item 149015372020.

rs1490153720 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:42667142 (GRCh38)
7:42706741 (GRCh37)
Canonical SPDI:: NC_000007.14:42667141:G:A
Gene:: LINC01448 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.42667142G>A, NC_000007.13:g.42706741G>A

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