SNP Links for Gene (Select 101928489) - SNP

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Links from Gene

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Select item 14909840401.

rs1490984040 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:73696742 (GRCh38)
6:74406465 (GRCh37)
Canonical SPDI:: NC_000006.12:73696741:C:G
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000029/4 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000006.12:g.73696742C>G, NC_000006.11:g.74406465C>G, NG_033971.1:g.5958C>G

Select item 14899061202.

rs1489906120 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:73697967 (GRCh38)
6:74407690 (GRCh37)
Canonical SPDI:: NC_000006.12:73697966:T:C
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.73697967T>C, NC_000006.11:g.74407690T>C, NG_033971.1:g.7183T>C

Select item 14898492693.

rs1489849269 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:73697988 (GRCh38)
6:74407711 (GRCh37)
Canonical SPDI:: NC_000006.12:73697987:C:A
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000036/5 (GnomAD)
HGVS:: NC_000006.12:g.73697988C>A, NC_000006.11:g.74407711C>A, NG_033971.1:g.7204C>A

Select item 14898187184.

rs1489818718 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:73695701 (GRCh38)
6:74405424 (GRCh37)
Canonical SPDI:: NC_000006.12:73695700:T:C
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.73695701T>C, NC_000006.11:g.74405424T>C, NG_033971.1:g.4917T>C

Select item 14894959405.

rs1489495940 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:73696477 (GRCh38)
6:74406200 (GRCh37)
Canonical SPDI:: NC_000006.12:73696476:A:G
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.73696477A>G, NC_000006.11:g.74406200A>G, NG_033971.1:g.5693A>G

Select item 14891858496.

rs1489185849 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:73697918 (GRCh38)
6:74407641 (GRCh37)
Canonical SPDI:: NC_000006.12:73697917:A:G
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.73697918A>G, NC_000006.11:g.74407641A>G, NG_033971.1:g.7134A>G

Select item 14888593447.

rs1488859344 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:73696712 (GRCh38)
6:74406435 (GRCh37)
Canonical SPDI:: NC_000006.12:73696711:G:C
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000006.12:g.73696712G>C, NC_000006.11:g.74406435G>C, NG_033971.1:g.5928G>C

Select item 14885130968.

rs1488513096 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:73696227 (GRCh38)
6:74405950 (GRCh37)
Canonical SPDI:: NC_000006.12:73696226:A:G
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,synonymous_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.73696227A>G, NC_000006.11:g.74405950A>G, NG_033971.1:g.5443A>G, NM_133493.5:c.12A>G, NM_133493.4:c.12A>G, NM_133493.3:c.12A>G, NM_001159587.3:c.12A>G, NM_001159587.2:c.12A>G, NM_001159587.1:c.12A>G, NM_001159588.3:c.12A>G, NM_001159588.2:c.12A>G, NM_001159588.1:c.12A>G

Select item 14884819329.

rs1488481932 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 6:73695202 (GRCh38)
6:74404925 (GRCh37)
Canonical SPDI:: NC_000006.12:73695201:T:
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.73695202del, NC_000006.11:g.74404925del, NG_033971.1:g.4418del, NR_110889.1:n.674del

Select item 148805409110.

rs1488054091 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:73696919 (GRCh38)
6:74406642 (GRCh37)
Canonical SPDI:: NC_000006.12:73696918:A:C
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.73696919A>C, NC_000006.11:g.74406642A>C, NG_033971.1:g.6135A>C

Select item 148782668611.

rs1487826686 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:73696133 (GRCh38)
6:74405856 (GRCh37)
Canonical SPDI:: NC_000006.12:73696132:C:A
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000006.12:g.73696133C>A, NC_000006.11:g.74405856C>A, NG_033971.1:g.5349C>A, NM_133493.4:c.-83C>A, NM_133493.3:c.-83C>A, NM_001159587.2:c.-83C>A, NM_001159588.2:c.-83C>A, NM_001159587.1:c.-83C>A, NM_001159588.1:c.-83C>A

Select item 148742448812.

rs1487424488 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:73696019 (GRCh38)
6:74405742 (GRCh37)
Canonical SPDI:: NC_000006.12:73696018:A:G
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.73696019A>G, NC_000006.11:g.74405742A>G, NG_033971.1:g.5235A>G, NM_133493.3:c.-197A>G, NM_001159587.1:c.-197A>G, NM_001159588.1:c.-197A>G, NR_110889.1:n.113T>C

Select item 148714058213.

rs1487140582 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:73697600 (GRCh38)
6:74407323 (GRCh37)
Canonical SPDI:: NC_000006.12:73697599:C:G
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.73697600C>G, NC_000006.11:g.74407323C>G, NG_033971.1:g.6816C>G

Select item 148686677114.

rs1486866771 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:73693757 (GRCh38)
6:74403480 (GRCh37)
Canonical SPDI:: NC_000006.12:73693756:G:A
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.73693757G>A, NC_000006.11:g.74403480G>A, NG_033971.1:g.2973G>A

Select item 148659247215.

rs1486592472 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:73697355 (GRCh38)
6:74407078 (GRCh37)
Canonical SPDI:: NC_000006.12:73697354:G:A
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
HGVS:: NC_000006.12:g.73697355G>A, NC_000006.11:g.74407078G>A, NG_033971.1:g.6571G>A

Select item 148490723316.

rs1484907233 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:73695725 (GRCh38)
6:74405448 (GRCh37)
Canonical SPDI:: NC_000006.12:73695724:G:C
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.73695725G>C, NC_000006.11:g.74405448G>C, NG_033971.1:g.4941G>C

Select item 148487710117.

rs1484877101 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:73694790 (GRCh38)
6:74404513 (GRCh37)
Canonical SPDI:: NC_000006.12:73694789:C:T
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000034/9 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000006.12:g.73694790C>T, NC_000006.11:g.74404513C>T, NG_033971.1:g.4006C>T, NR_110889.1:n.1086G>A

Select item 148454196718.

rs1484541967 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:73697419 (GRCh38)
6:74407142 (GRCh37)
Canonical SPDI:: NC_000006.12:73697418:G:T
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,missense_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.73697419G>T, NC_000006.11:g.74407142G>T, NG_033971.1:g.6635G>T, NM_133493.5:c.94G>T, NM_133493.4:c.94G>T, NM_133493.3:c.94G>T, NM_001159587.3:c.94G>T, NM_001159587.2:c.94G>T, NM_001159587.1:c.94G>T, NM_001159588.3:c.94G>T, NM_001159588.2:c.94G>T, NM_001159588.1:c.94G>T, XM_047418211.1:c.55G>T, NP_598000.2:p.Ala32Ser, NP_001153059.1:p.Ala32Ser, NP_001153060.1:p.Ala32Ser, XP_047274167.1:p.Ala19Ser

Select item 148264488219.

rs1482644882 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:73693505 (GRCh38)
6:74403228 (GRCh37)
Canonical SPDI:: NC_000006.12:73693504:T:A
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.73693505T>A, NC_000006.11:g.74403228T>A, NG_033971.1:g.2721T>A

Select item 148149289820.

rs1481492898 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:73696511 (GRCh38)
6:74406234 (GRCh37)
Canonical SPDI:: NC_000006.12:73696510:T:A
Gene:: CD109 (Varview), CD109-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.73696511T>A, NC_000006.11:g.74406234T>A, NG_033971.1:g.5727T>A