SNP Links for Gene (Select 101928311) - SNP

Links from Gene

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Select item 14909985381.

rs1490998538 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:42779166 (GRCh38)
21:44199276 (GRCh37)
Canonical SPDI:: NC_000021.9:42779165:T:C
Gene:: LINC01668 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000021.9:g.42779166T>C, NC_000021.8:g.44199276T>C

Select item 14888558812.

rs1488855881 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:42778699 (GRCh38)
21:44198809 (GRCh37)
Canonical SPDI:: NC_000021.9:42778698:C:T
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/2 (GnomAD)
T=0.000119/2 (TOMMO)
HGVS:: NC_000021.9:g.42778699C>T, NC_000021.8:g.44198809C>T

Select item 14886190673.

rs1488619067 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 21:42781749 (GRCh38)
21:44201859 (GRCh37)
Canonical SPDI:: NC_000021.9:42781748:A:C,NC_000021.9:42781748:A:G,NC_000021.9:42781748:A:T
Gene:: LINC01668 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0./0 (SGDP_PRJ)
C=0.000009/1 (GnomAD)
HGVS:: NC_000021.9:g.42781749A>C, NC_000021.9:g.42781749A>G, NC_000021.9:g.42781749A>T, NC_000021.8:g.44201859A>C, NC_000021.8:g.44201859A>G, NC_000021.8:g.44201859A>T

Select item 14880016384.

rs1488001638 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:42780876 (GRCh38)
21:44200986 (GRCh37)
Canonical SPDI:: NC_000021.9:42780875:T:C
Gene:: LINC01668 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.42780876T>C, NC_000021.8:g.44200986T>C

Select item 14879436605.

rs1487943660 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 21:42778708 (GRCh38)
21:44198818 (GRCh37)
Canonical SPDI:: NC_000021.9:42778707:C:A
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000021.9:g.42778708C>A, NC_000021.8:g.44198818C>A

Select item 14877249456.

rs1487724945 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:42780894 (GRCh38)
21:44201004 (GRCh37)
Canonical SPDI:: NC_000021.9:42780893:G:A
Gene:: LINC01668 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.42780894G>A, NC_000021.8:g.44201004G>A

Select item 14869821207.

rs1486982120 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:42781303 (GRCh38)
21:44201413 (GRCh37)
Canonical SPDI:: NC_000021.9:42781302:T:C
Gene:: LINC01668 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.42781303T>C, NC_000021.8:g.44201413T>C

Select item 14865420908.

rs1486542090 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 21:42778029 (GRCh38)
21:44198139 (GRCh37)
Canonical SPDI:: NC_000021.9:42778028:G:C
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000684/2 (KOREAN)
HGVS:: NC_000021.9:g.42778029G>C, NC_000021.8:g.44198139G>C

Select item 14861372529.

rs1486137252 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:42777503 (GRCh38)
21:44197613 (GRCh37)
Canonical SPDI:: NC_000021.9:42777502:G:A
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.42777503G>A, NC_000021.8:g.44197613G>A, NG_047067.1:g.128752G>A

Select item 148559456810.

rs1485594568 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 21:42777350 (GRCh38)
21:44197460 (GRCh37)
Canonical SPDI:: NC_000021.9:42777349:A:C,NC_000021.9:42777349:A:G
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.42777350A>C, NC_000021.9:g.42777350A>G, NC_000021.8:g.44197460A>C, NC_000021.8:g.44197460A>G, NG_047067.1:g.128599A>C, NG_047067.1:g.128599A>G

Select item 148411064611.

rs1484110646 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:42778890 (GRCh38)
21:44199000 (GRCh37)
Canonical SPDI:: NC_000021.9:42778889:T:C
Gene:: LINC01668 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000087/23 (TOPMED)
C=0.000123/17 (GnomAD)
HGVS:: NC_000021.9:g.42778890T>C, NC_000021.8:g.44199000T>C

Select item 148310137212.

rs1483101372 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:42778891 (GRCh38)
21:44199001 (GRCh37)
Canonical SPDI:: NC_000021.9:42778890:T:C
Gene:: LINC01668 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000021.9:g.42778891T>C, NC_000021.8:g.44199001T>C

Select item 148300922013.

rs1483009220 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 21:42777596 (GRCh38)
21:44197706 (GRCh37)
Canonical SPDI:: NC_000021.9:42777595:G:A,NC_000021.9:42777595:G:T
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000021.9:g.42777596G>A, NC_000021.9:g.42777596G>T, NC_000021.8:g.44197706G>A, NC_000021.8:g.44197706G>T

Select item 148202799714.

rs1482027997 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 21:42777928 (GRCh38)
21:44198038 (GRCh37)
Canonical SPDI:: NC_000021.9:42777927:A:C,NC_000021.9:42777927:A:G
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.00006/1 (TOMMO)
HGVS:: NC_000021.9:g.42777928A>C, NC_000021.9:g.42777928A>G, NC_000021.8:g.44198038A>C, NC_000021.8:g.44198038A>G, NR_135517.1:n.404T>G, NR_135517.1:n.404T>C

Select item 148066735515.

rs1480667355 [Homo sapiens]

Variant type:: DELINS
Alleles:: AC>- [Show Flanks]
Chromosome:: 21:42779516 (GRCh38)
21:44199626 (GRCh37)
Canonical SPDI:: NC_000021.9:42779513:ACAC:AC
Gene:: LINC01668 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACAC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.42779514AC[1], NC_000021.8:g.44199624AC[1]

Select item 147955599916.

rs1479555999 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 21:42779192 (GRCh38)
21:44199302 (GRCh37)
Canonical SPDI:: NC_000021.9:42779191:C:G,NC_000021.9:42779191:C:T
Gene:: LINC01668 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000021.9:g.42779192C>G, NC_000021.9:g.42779192C>T, NC_000021.8:g.44199302C>G, NC_000021.8:g.44199302C>T

Select item 147899519317.

rs1478995193 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 21:42781444 (GRCh38)
21:44201554 (GRCh37)
Canonical SPDI:: NC_000021.9:42781443:A:C,NC_000021.9:42781443:A:G
Gene:: LINC01668 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000021.9:g.42781444A>C, NC_000021.9:g.42781444A>G, NC_000021.8:g.44201554A>C, NC_000021.8:g.44201554A>G

Select item 147837037218.

rs1478370372 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>A
Chromosome:: no mapping
Canonical SPDI:

Select item 147831620619.

rs1478316206 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:42779174 (GRCh38)
21:44199284 (GRCh37)
Canonical SPDI:: NC_000021.9:42779173:T:C
Gene:: LINC01668 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/2 (GnomAD)
HGVS:: NC_000021.9:g.42779174T>C, NC_000021.8:g.44199284T>C

Select item 147767707520.

rs1477677075 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 21:42777367 (GRCh38)
21:44197477 (GRCh37)
Canonical SPDI:: NC_000021.9:42777365:AGA:A
Gene:: LINC01668 (Varview), LOC107985504 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.42777367_42777368del, NC_000021.8:g.44197477_44197478del, NG_047067.1:g.128616_128617del

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