SNP Links for Gene (Select 101928304) - SNP

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Select item 14913590851.

rs1491359085 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 6:134528945 (GRCh38)
6:134850083 (GRCh37)
Canonical SPDI:: NC_000006.12:134528944:CA:
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.0677/803 (ALFA)
-=0.00906/144 (TOMMO)
HGVS:: NC_000006.12:g.134528945_134528946del, NC_000006.11:g.134850083_134850084del

Select item 14913007942.

rs1491300794 has merged into rs35990300 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAA>-,A,AAA,AAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 6:134528954 (GRCh38)
6:134850092 (GRCh37)
Canonical SPDI:: NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:134528945:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
HGVS:: NC_000006.12:g.134528954_134528968del, NC_000006.12:g.134528955_134528968del, NC_000006.12:g.134528957_134528968del, NC_000006.12:g.134528958_134528968del, NC_000006.12:g.134528961_134528968del, NC_000006.12:g.134528962_134528968del, NC_000006.12:g.134528963_134528968del, NC_000006.12:g.134528964_134528968del, NC_000006.12:g.134528965_134528968del, NC_000006.12:g.134528966_134528968del, NC_000006.12:g.134528967_134528968del, NC_000006.12:g.134528968del, NC_000006.12:g.134528968dup, NC_000006.12:g.134528967_134528968dup, NC_000006.12:g.134528966_134528968dup, NC_000006.12:g.134528965_134528968dup, NC_000006.12:g.134528964_134528968dup, NC_000006.12:g.134528963_134528968dup, NC_000006.12:g.134528962_134528968dup, NC_000006.12:g.134528961_134528968dup, NC_000006.12:g.134528960_134528968dup, NC_000006.12:g.134528959_134528968dup, NC_000006.12:g.134528956_134528968dup, NC_000006.12:g.134528968_134528969insAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000006.12:g.134528968_134528969insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000006.12:g.134528968_134528969insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000006.11:g.134850092_134850106del, NC_000006.11:g.134850093_134850106del, NC_000006.11:g.134850095_134850106del, NC_000006.11:g.134850096_134850106del, NC_000006.11:g.134850099_134850106del, NC_000006.11:g.134850100_134850106del, NC_000006.11:g.134850101_134850106del, NC_000006.11:g.134850102_134850106del, NC_000006.11:g.134850103_134850106del, NC_000006.11:g.134850104_134850106del, NC_000006.11:g.134850105_134850106del, NC_000006.11:g.134850106del, NC_000006.11:g.134850106dup, NC_000006.11:g.134850105_134850106dup, NC_000006.11:g.134850104_134850106dup, NC_000006.11:g.134850103_134850106dup, NC_000006.11:g.134850102_134850106dup, NC_000006.11:g.134850101_134850106dup, NC_000006.11:g.134850100_134850106dup, NC_000006.11:g.134850099_134850106dup, NC_000006.11:g.134850098_134850106dup, NC_000006.11:g.134850097_134850106dup, NC_000006.11:g.134850094_134850106dup, NC_000006.11:g.134850106_134850107insAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000006.11:g.134850106_134850107insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000006.11:g.134850106_134850107insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14911998943.

rs1491199894 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA [Show Flanks]
Chromosome:: 6:134532649 (GRCh38)
6:134853788 (GRCh37)
Canonical SPDI:: NC_000006.12:134532649::TA
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TA=0./0 (ALFA)
HGVS:: NC_000006.12:g.134532649_134532650insTA, NC_000006.11:g.134853787_134853788insTA

Select item 14911561734.

rs1491156173 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 6:134532649 (GRCh38)
6:134853787 (GRCh37)
Canonical SPDI:: NC_000006.12:134532648:TA:
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000102/13 (GnomAD)
HGVS:: NC_000006.12:g.134532649_134532650del, NC_000006.11:g.134853787_134853788del

Select item 14910405965.

rs1491040596 has merged into rs59126947 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 6:134532664 (GRCh38)
6:134853802 (GRCh37)
Canonical SPDI:: NC_000006.12:134532649:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000006.12:134532649:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000006.12:134532649:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000006.12:134532649:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000006.12:134532649:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000006.12:134532649:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000006.12:g.134532664_134532666del, NC_000006.12:g.134532665_134532666del, NC_000006.12:g.134532666del, NC_000006.12:g.134532666dup, NC_000006.12:g.134532665_134532666dup, NC_000006.12:g.134532664_134532666dup, NC_000006.11:g.134853802_134853804del, NC_000006.11:g.134853803_134853804del, NC_000006.11:g.134853804del, NC_000006.11:g.134853804dup, NC_000006.11:g.134853803_134853804dup, NC_000006.11:g.134853802_134853804dup

Select item 14908605576.

rs1490860557 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 6:134525705 (GRCh38)
6:134846843 (GRCh37)
Canonical SPDI:: NC_000006.12:134525704:GG:G
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0.000071/1 (ALFA)
-=0.000029/4 (GnomAD)
-=0.000038/10 (TOPMED)
HGVS:: NC_000006.12:g.134525706del, NC_000006.11:g.134846844del

Select item 14907865327.

rs1490786532 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 6:134541901 (GRCh38)
6:134863039 (GRCh37)
Canonical SPDI:: NC_000006.12:134541900:C:A,NC_000006.12:134541900:C:G
Gene:: LINC03002 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.134541901C>A, NC_000006.12:g.134541901C>G, NC_000006.11:g.134863039C>A, NC_000006.11:g.134863039C>G

Select item 14907783798.

rs1490778379 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:134527097 (GRCh38)
6:134848235 (GRCh37)
Canonical SPDI:: NC_000006.12:134527096:G:A
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.134527097G>A, NC_000006.11:g.134848235G>A

Select item 14906604949.

rs1490660494 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:134535789 (GRCh38)
6:134856927 (GRCh37)
Canonical SPDI:: NC_000006.12:134535788:G:T
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000006.12:g.134535789G>T, NC_000006.11:g.134856927G>T

Select item 149062247810.

rs1490622478 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATCA [Show Flanks]
Chromosome:: 6:134540784 (GRCh38)
6:134861923 (GRCh37)
Canonical SPDI:: NC_000006.12:134540784:TCAATCA:TCAATCAATCA
Gene:: LINC03002 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCAATCAATCA=0./0 (ALFA)
TCAA=0.000014/2 (GnomAD)
TCAA=0.000038/10 (TOPMED)
HGVS:: NC_000006.12:g.134540788_134540791dup, NC_000006.11:g.134861926_134861929dup

Select item 149059218811.

rs1490592188 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 6:134536368 (GRCh38)
6:134857507 (GRCh37)
Canonical SPDI:: NC_000006.12:134536368:CCCC:CCCCC
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.134536372dup, NC_000006.11:g.134857510dup

Select item 149056719312.

rs1490567193 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:134535157 (GRCh38)
6:134856295 (GRCh37)
Canonical SPDI:: NC_000006.12:134535156:T:C
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.134535157T>C, NC_000006.11:g.134856295T>C

Select item 149025189213.

rs1490251892 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:134535291 (GRCh38)
6:134856429 (GRCh37)
Canonical SPDI:: NC_000006.12:134535290:A:G
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.134535291A>G, NC_000006.11:g.134856429A>G

Select item 148970360114.

rs1489703601 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:134534616 (GRCh38)
6:134855754 (GRCh37)
Canonical SPDI:: NC_000006.12:134534615:A:G
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000006.12:g.134534616A>G, NC_000006.11:g.134855754A>G

Select item 148965972915.

rs1489659729 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:134530046 (GRCh38)
6:134851184 (GRCh37)
Canonical SPDI:: NC_000006.12:134530045:G:A
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000162/3 (ALFA)
A=0.00005/7 (GnomAD)
A=0.000072/19 (TOPMED)
A=0.000446/2 (Estonian)
HGVS:: NC_000006.12:g.134530046G>A, NC_000006.11:g.134851184G>A

Select item 148961669816.

rs1489616698 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 6:134526235 (GRCh38)
6:134847373 (GRCh37)
Canonical SPDI:: NC_000006.12:134526234:T:A,NC_000006.12:134526234:T:G
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000006.12:g.134526235T>A, NC_000006.12:g.134526235T>G, NC_000006.11:g.134847373T>A, NC_000006.11:g.134847373T>G

Select item 148949414617.

rs1489494146 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:134538375 (GRCh38)
6:134859513 (GRCh37)
Canonical SPDI:: NC_000006.12:134538374:A:G
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.134538375A>G, NC_000006.11:g.134859513A>G

Select item 148943210518.

rs1489432105 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:134537297 (GRCh38)
6:134858435 (GRCh37)
Canonical SPDI:: NC_000006.12:134537296:C:T
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.134537297C>T, NC_000006.11:g.134858435C>T

Select item 148929179619.

rs1489291796 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:134536993 (GRCh38)
6:134858131 (GRCh37)
Canonical SPDI:: NC_000006.12:134536992:T:C
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.134536993T>C, NC_000006.11:g.134858131T>C

Select item 148924041520.

rs1489240415 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:134539258 (GRCh38)
6:134860396 (GRCh37)
Canonical SPDI:: NC_000006.12:134539257:T:C
Gene:: LINC03002 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000053/14 (TOPMED)
C=0.000057/8 (GnomAD)
HGVS:: NC_000006.12:g.134539258T>C, NC_000006.11:g.134860396T>C

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