SNP Links for Gene (Select 101927703) - SNP

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Select item 14902100131.

rs1490210013 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:1604054 (GRCh38)
6:1604289 (GRCh37)
Canonical SPDI:: NC_000006.12:1604053:C:A
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.1604054C>A, NC_000006.11:g.1604289C>A

Select item 14897520162.

rs1489752016 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:1603707 (GRCh38)
6:1603942 (GRCh37)
Canonical SPDI:: NC_000006.12:1603706:G:C
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.1603707G>C, NC_000006.11:g.1603942G>C

Select item 14894316083.

rs1489431608 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:1605089 (GRCh38)
6:1605324 (GRCh37)
Canonical SPDI:: NC_000006.12:1605088:G:A
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000142/2 (ALFA)
A=0.000023/6 (TOPMED)
HGVS:: NC_000006.12:g.1605089G>A, NC_000006.11:g.1605324G>A

Select item 14891388124.

rs1489138812 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:1607844 (GRCh38)
6:1608079 (GRCh37)
Canonical SPDI:: NC_000006.12:1607843:C:A
Gene:: FOXCUT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.1607844C>A, NC_000006.11:g.1608079C>A, NG_009368.1:g.2399C>A

Select item 14883162945.

rs1488316294 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 14869489206.

rs1486948920 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:1605668 (GRCh38)
6:1605903 (GRCh37)
Canonical SPDI:: NC_000006.12:1605667:A:G
Gene:: FOXCUT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.1605668A>G, NC_000006.11:g.1605903A>G, NG_009368.1:g.223A>G, NR_125804.1:n.138A>G

Select item 14863507487.

rs1486350748 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 6:1604304 (GRCh38)
6:1604540 (GRCh37)
Canonical SPDI:: NC_000006.12:1604304:GGGG:GGGGG
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGG=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000006.12:g.1604308dup, NC_000006.11:g.1604543dup

Select item 14848873148.

rs1484887314 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:1604355 (GRCh38)
6:1604590 (GRCh37)
Canonical SPDI:: NC_000006.12:1604354:C:A,NC_000006.12:1604354:C:T
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000006.12:g.1604355C>A, NC_000006.12:g.1604355C>T, NC_000006.11:g.1604590C>A, NC_000006.11:g.1604590C>T

Select item 14840907209.

rs1484090720 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:1607845 (GRCh38)
6:1608080 (GRCh37)
Canonical SPDI:: NC_000006.12:1607844:T:C
Gene:: FOXCUT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000006.12:g.1607845T>C, NC_000006.11:g.1608080T>C, NG_009368.1:g.2400T>C

Select item 148311000410.

rs1483110004 has merged into rs1325465879 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAG>-,AG [Show Flanks]
Chromosome:: 6:1606863 (GRCh38)
6:1607098 (GRCh37)
Canonical SPDI:: NC_000006.12:1606860:AGAGAG:AG,NC_000006.12:1606860:AGAGAG:AGAG
Gene:: FOXCUT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
HGVS:: NC_000006.12:g.1606861AG[1], NC_000006.12:g.1606861AG[2], NC_000006.11:g.1607096AG[1], NC_000006.11:g.1607096AG[2], NG_009368.1:g.1416AG[1], NG_009368.1:g.1416AG[2], NR_125804.1:n.1115AG[1], NR_125804.1:n.1115AG[2]

Select item 148262956811.

rs1482629568 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:1606673 (GRCh38)
6:1606908 (GRCh37)
Canonical SPDI:: NC_000006.12:1606672:G:A,NC_000006.12:1606672:G:C
Gene:: FOXCUT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
C=0.000283/5 (TOMMO)
C=0.001027/3 (KOREAN)
HGVS:: NC_000006.12:g.1606673G>A, NC_000006.12:g.1606673G>C, NC_000006.11:g.1606908G>A, NC_000006.11:g.1606908G>C, NG_009368.1:g.1228G>A, NG_009368.1:g.1228G>C, NR_125804.1:n.927G>A, NR_125804.1:n.927G>C

Select item 148182639812.

rs1481826398 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 6:1603722 (GRCh38)
6:1603957 (GRCh37)
Canonical SPDI:: NC_000006.12:1603721:TTT:TT
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.1603724del, NC_000006.11:g.1603959del

Select item 148092707013.

rs1480927070 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTT [Show Flanks]
Chromosome:: 6:1605858 (GRCh38)
6:1606094 (GRCh37)
Canonical SPDI:: NC_000006.12:1605858:CTT:CTTCTT
Gene:: FOXCUT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTCTT=0.000071/1 (ALFA)
CTT=0.000007/1 (GnomAD)
CTT=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.1605859_1605861dup, NC_000006.11:g.1606094_1606096dup, NG_009368.1:g.414_416dup

Select item 147988999314.

rs1479889993 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:1607239 (GRCh38)
6:1607474 (GRCh37)
Canonical SPDI:: NC_000006.12:1607238:C:G
Gene:: FOXCUT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.1607239C>G, NC_000006.11:g.1607474C>G, NG_009368.1:g.1794C>G, NR_125804.1:n.1493C>G

Select item 147921198815.

rs1479211988 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:1603801 (GRCh38)
6:1604036 (GRCh37)
Canonical SPDI:: NC_000006.12:1603800:C:G
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.1603801C>G, NC_000006.11:g.1604036C>G

Select item 147919764416.

rs1479197644 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:1606882 (GRCh38)
6:1607117 (GRCh37)
Canonical SPDI:: NC_000006.12:1606881:G:A
Gene:: FOXCUT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000006.12:g.1606882G>A, NC_000006.11:g.1607117G>A, NG_009368.1:g.1437G>A, NR_125804.1:n.1136G>A

Select item 147884298417.

rs1478842984 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:1607684 (GRCh38)
6:1607919 (GRCh37)
Canonical SPDI:: NC_000006.12:1607683:G:C
Gene:: FOXCUT (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.1607684G>C, NC_000006.11:g.1607919G>C, NG_009368.1:g.2239G>C

Select item 147861918118.

rs1478619181 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:1604804 (GRCh38)
6:1605039 (GRCh37)
Canonical SPDI:: NC_000006.12:1604803:G:A
Gene:: FOXCUT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000142/2 (TOMMO)
A=0.000343/1 (KOREAN)
HGVS:: NC_000006.12:g.1604804G>A, NC_000006.11:g.1605039G>A

Select item 147796809019.

rs1477968090 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:1605548 (GRCh38)
6:1605783 (GRCh37)
Canonical SPDI:: NC_000006.12:1605547:C:G
Gene:: FOXCUT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.1605548C>G, NC_000006.11:g.1605783C>G, NG_009368.1:g.103C>G, NR_125804.1:n.18C>G

Select item 147652203320.

rs1476522033 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:1606690 (GRCh38)
6:1606925 (GRCh37)
Canonical SPDI:: NC_000006.12:1606689:G:A
Gene:: FOXCUT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.1606690G>A, NC_000006.11:g.1606925G>A, NG_009368.1:g.1245G>A, NR_125804.1:n.944G>A

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