SNP Links for Gene (Select 101927505) - SNP

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Select item 14915677521.

rs1491567752 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:101605378 (GRCh38)
15:102145581 (GRCh37)
Canonical SPDI:: NC_000015.10:101605377:CA:
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000759/9 (ALFA)
-=0.000035/1 (TOMMO)
-=0.000424/58 (GnomAD)
HGVS:: NC_000015.10:g.101605378_101605379del, NC_000015.9:g.102145581_102145582del, NR_147041.1:n.1287_1288del

Select item 14913358672.

rs1491335867 has merged into rs869199300 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,G,GG,GGGGG,GGGGGGG,GGGGGGGG,GGGGGGGGGG,GGGGGGGGGGGG [Show Flanks]
Chromosome:: 15:101607128 (GRCh38)
15:102147331 (GRCh37)
Canonical SPDI:: NC_000015.10:101607126:GGGG:G,NC_000015.10:101607126:GGGG:GG,NC_000015.10:101607126:GGGG:GGG,NC_000015.10:101607126:GGGG:GGGGGG,NC_000015.10:101607126:GGGG:GGGGGGGG,NC_000015.10:101607126:GGGG:GGGGGGGGG,NC_000015.10:101607126:GGGG:GGGGGGGGGGG,NC_000015.10:101607126:GGGG:GGGGGGGGGGGGG
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.00021/4 (TOMMO)
-=0.00833/5 (NorthernSweden)
-=0.03857/143 (TWINSUK)
-=0.04177/161 (ALSPAC)
HGVS:: NC_000015.10:g.101607128_101607130del, NC_000015.10:g.101607129_101607130del, NC_000015.10:g.101607130del, NC_000015.10:g.101607129_101607130dup, NC_000015.10:g.101607127_101607130dup, NC_000015.10:g.101607130_101607131insGGGGG, NC_000015.10:g.101607130_101607131insGGGGGGG, NC_000015.10:g.101607130_101607131insGGGGGGGGG, NC_000015.9:g.102147331_102147333del, NC_000015.9:g.102147332_102147333del, NC_000015.9:g.102147333del, NC_000015.9:g.102147332_102147333dup, NC_000015.9:g.102147330_102147333dup, NC_000015.9:g.102147333_102147334insGGGGG, NC_000015.9:g.102147333_102147334insGGGGGGG, NC_000015.9:g.102147333_102147334insGGGGGGGGG

Select item 14913202383.

rs1491320238 has merged into rs869188598 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 15:101605390 (GRCh38)
15:102145593 (GRCh37)
Canonical SPDI:: NC_000015.10:101605378:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:101605378:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:101605378:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:101605378:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:101605378:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:101605378:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000015.10:g.101605390_101605392del, NC_000015.10:g.101605391_101605392del, NC_000015.10:g.101605392del, NC_000015.10:g.101605392dup, NC_000015.10:g.101605391_101605392dup, NC_000015.10:g.101605390_101605392dup, NC_000015.9:g.102145593_102145595del, NC_000015.9:g.102145594_102145595del, NC_000015.9:g.102145595del, NC_000015.9:g.102145595dup, NC_000015.9:g.102145594_102145595dup, NC_000015.9:g.102145593_102145595dup, NR_147041.1:n.1285_1287del, NR_147041.1:n.1286_1287del, NR_147041.1:n.1287del, NR_147041.1:n.1287dup, NR_147041.1:n.1286_1287dup, NR_147041.1:n.1285_1287dup

Select item 14908962044.

rs1490896204 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:101608148 (GRCh38)
15:102148351 (GRCh37)
Canonical SPDI:: NC_000015.10:101608147:T:G
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.101608148T>G, NC_000015.9:g.102148351T>G

Select item 14907829095.

rs1490782909 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:101614973 (GRCh38)
15:102155176 (GRCh37)
Canonical SPDI:: NC_000015.10:101614972:G:A
Gene:: LINC02348 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.101614973G>A, NC_000015.9:g.102155176G>A

Select item 14905274566.

rs1490527456 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:101613714 (GRCh38)
15:102153917 (GRCh37)
Canonical SPDI:: NC_000015.10:101613713:C:T
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.101613714C>T, NC_000015.9:g.102153917C>T, NR_147041.1:n.451G>A

Select item 14903753457.

rs1490375345 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:101604480 (GRCh38)
15:102144683 (GRCh37)
Canonical SPDI:: NC_000015.10:101604479:T:C
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000318/5 (TOMMO)
HGVS:: NC_000015.10:g.101604480T>C, NC_000015.9:g.102144683T>C, NR_147041.1:n.2186A>G

Select item 14903411448.

rs1490341144 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:101603196 (GRCh38)
15:102143399 (GRCh37)
Canonical SPDI:: NC_000015.10:101603195:C:A,NC_000015.10:101603195:C:T
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000029/4 (GnomAD)
T=0.00003/8 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.101603196C>A, NC_000015.10:g.101603196C>T, NC_000015.9:g.102143399C>A, NC_000015.9:g.102143399C>T, NR_147041.1:n.3470G>T, NR_147041.1:n.3470G>A

Select item 14903302559.

rs1490330255 [Homo sapiens]

Variant type:: DEL
Alleles:: TTGTGTGTGTGTGTGT>- [Show Flanks]
Chromosome:: 15:101607079 (GRCh38)
15:102147282 (GRCh37)
Canonical SPDI:: NC_000015.10:101607078:TTGTGTGTGTGTGTGT:
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000015.10:g.101607079_101607094del, NC_000015.9:g.102147282_102147297del

Select item 148975068710.

rs1489750687 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:101609881 (GRCh38)
15:102150084 (GRCh37)
Canonical SPDI:: NC_000015.10:101609880:G:C
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.101609881G>C, NC_000015.9:g.102150084G>C

Select item 148962764111.

rs1489627641 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:101613352 (GRCh38)
15:102153555 (GRCh37)
Canonical SPDI:: NC_000015.10:101613351:G:C
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.101613352G>C, NC_000015.9:g.102153555G>C

Select item 148932225912.

rs1489322259 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:101603417 (GRCh38)
15:102143620 (GRCh37)
Canonical SPDI:: NC_000015.10:101603416:G:C
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.101603417G>C, NC_000015.9:g.102143620G>C, NR_147041.1:n.3249C>G

Select item 148929141913.

rs1489291419 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:101612038 (GRCh38)
15:102152241 (GRCh37)
Canonical SPDI:: NC_000015.10:101612037:G:A
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.101612038G>A, NC_000015.9:g.102152241G>A

Select item 148920215914.

rs1489202159 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:101605979 (GRCh38)
15:102146182 (GRCh37)
Canonical SPDI:: NC_000015.10:101605978:T:A
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.101605979T>A, NC_000015.9:g.102146182T>A, NR_147041.1:n.687A>T

Select item 148919205515.

rs1489192055 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:101613221 (GRCh38)
15:102153424 (GRCh37)
Canonical SPDI:: NC_000015.10:101613220:G:C
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.101613221G>C, NC_000015.9:g.102153424G>C

Select item 148911716816.

rs1489117168 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:101613592 (GRCh38)
15:102153795 (GRCh37)
Canonical SPDI:: NC_000015.10:101613591:T:C
Gene:: LINC02348 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.101613592T>C, NC_000015.9:g.102153795T>C, NR_147041.1:n.573A>G

Select item 148879071917.

rs1488790719 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:101614368 (GRCh38)
15:102154571 (GRCh37)
Canonical SPDI:: NC_000015.10:101614367:C:G,NC_000015.10:101614367:C:T
Gene:: LINC02348 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.00005/7 (GnomAD)
HGVS:: NC_000015.10:g.101614368C>G, NC_000015.10:g.101614368C>T, NC_000015.9:g.102154571C>G, NC_000015.9:g.102154571C>T

Select item 148845252618.

rs1488452526 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:101612595 (GRCh38)
15:102152798 (GRCh37)
Canonical SPDI:: NC_000015.10:101612594:T:A
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.101612595T>A, NC_000015.9:g.102152798T>A

Select item 148800800919.

rs1488008009 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:101611244 (GRCh38)
15:102151447 (GRCh37)
Canonical SPDI:: NC_000015.10:101611243:A:G
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.101611244A>G, NC_000015.9:g.102151447A>G

Select item 148793663420.

rs1487936634 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAG>- [Show Flanks]
Chromosome:: 15:101607678 (GRCh38)
15:102147881 (GRCh37)
Canonical SPDI:: NC_000015.10:101607675:AGAAG:AG
Gene:: LINC02348 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.101607678_101607680del, NC_000015.9:g.102147881_102147883del

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