SNP Links for Gene (Select 101927464) - SNP

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Select item 14914389531.

rs1491438953 has merged into rs556121607 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTT [Show Flanks]
Chromosome:: 12:126096663 (GRCh38)
12:126581209 (GRCh37)
Canonical SPDI:: NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000012.12:126096650:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.2426/1215 (1000Genomes)
HGVS:: NC_000012.12:g.126096663_126096665del, NC_000012.12:g.126096664_126096665del, NC_000012.12:g.126096665del, NC_000012.12:g.126096665dup, NC_000012.12:g.126096664_126096665dup, NC_000012.12:g.126096663_126096665dup, NC_000012.12:g.126096662_126096665dup, NC_000012.12:g.126096661_126096665dup, NC_000012.12:g.126096657_126096665dup, NC_000012.11:g.126581209_126581211del, NC_000012.11:g.126581210_126581211del, NC_000012.11:g.126581211del, NC_000012.11:g.126581211dup, NC_000012.11:g.126581210_126581211dup, NC_000012.11:g.126581209_126581211dup, NC_000012.11:g.126581208_126581211dup, NC_000012.11:g.126581207_126581211dup, NC_000012.11:g.126581203_126581211dup

Select item 14910828182.

rs1491082818 [Homo sapiens]

Variant type:: DELINS
Alleles:: GC>- [Show Flanks]
Chromosome:: 12:126099926 (GRCh38)
12:126584472 (GRCh37)
Canonical SPDI:: NC_000012.12:126099924:CGC:C
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000012.12:g.126099926_126099927del, NC_000012.11:g.126584472_126584473del

Select item 14910499263.

rs1491049926 has merged into rs72375282 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATAT>-,AT,ATATAT,ATATATAT,ATATATATAT [Show Flanks]
Chromosome:: 12:126097630 (GRCh38)
12:126582176 (GRCh37)
Canonical SPDI:: NC_000012.12:126097616:TATATATATATATATAT:TATATATATATAT,NC_000012.12:126097616:TATATATATATATATAT:TATATATATATATAT,NC_000012.12:126097616:TATATATATATATATAT:TATATATATATATATATAT,NC_000012.12:126097616:TATATATATATATATAT:TATATATATATATATATATAT,NC_000012.12:126097616:TATATATATATATATAT:TATATATATATATATATATATAT
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATATATATAT=0./0 (ALFA)
-=0.24718/65426 (TOPMED)
HGVS:: NC_000012.12:g.126097618AT[6], NC_000012.12:g.126097618AT[7], NC_000012.12:g.126097618AT[9], NC_000012.12:g.126097618AT[10], NC_000012.12:g.126097618AT[11], NC_000012.11:g.126582164AT[6], NC_000012.11:g.126582164AT[7], NC_000012.11:g.126582164AT[9], NC_000012.11:g.126582164AT[10], NC_000012.11:g.126582164AT[11]

Select item 14909018364.

rs1490901836 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:126104183 (GRCh38)
12:126588729 (GRCh37)
Canonical SPDI:: NC_000012.12:126104182:G:A
Gene:: LINC02359 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.126104183G>A, NC_000012.11:g.126588729G>A

Select item 14908315955.

rs1490831595 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:126097890 (GRCh38)
12:126582436 (GRCh37)
Canonical SPDI:: NC_000012.12:126097889:T:C
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.126097890T>C, NC_000012.11:g.126582436T>C

Select item 14908053866.

rs1490805386 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:126100038 (GRCh38)
12:126584584 (GRCh37)
Canonical SPDI:: NC_000012.12:126100037:G:T
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.126100038G>T, NC_000012.11:g.126584584G>T

Select item 14907784967.

rs1490778496 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:126096916 (GRCh38)
12:126581462 (GRCh37)
Canonical SPDI:: NC_000012.12:126096915:C:T
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.126096916C>T, NC_000012.11:g.126581462C>T

Select item 14903406658.

rs1490340665 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:126098335 (GRCh38)
12:126582881 (GRCh37)
Canonical SPDI:: NC_000012.12:126098334:A:G
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.126098335A>G, NC_000012.11:g.126582881A>G

Select item 14902684699.

rs1490268469 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 12:126097478 (GRCh38)
12:126582024 (GRCh37)
Canonical SPDI:: NC_000012.12:126097477:T:A,NC_000012.12:126097477:T:C
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000036/5 (GnomAD)
C=0.000053/14 (TOPMED)
HGVS:: NC_000012.12:g.126097478T>A, NC_000012.12:g.126097478T>C, NC_000012.11:g.126582024T>A, NC_000012.11:g.126582024T>C

Select item 148998881110.

rs1489988811 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 12:126100948 (GRCh38)
12:126585495 (GRCh37)
Canonical SPDI:: NC_000012.12:126100948:A:AA
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000287/35 (GnomAD)
HGVS:: NC_000012.12:g.126100949dup, NC_000012.11:g.126585495dup

Select item 148982916611.

rs1489829166 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:126098822 (GRCh38)
12:126583368 (GRCh37)
Canonical SPDI:: NC_000012.12:126098821:A:G
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.126098822A>G, NC_000012.11:g.126583368A>G

Select item 148927667312.

rs1489276673 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:126095680 (GRCh38)
12:126580226 (GRCh37)
Canonical SPDI:: NC_000012.12:126095679:C:G
Gene:: LINC02359 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.126095680C>G, NC_000012.11:g.126580226C>G

Select item 148926881713.

rs1489268817 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 12:126104345 (GRCh38)
12:126588891 (GRCh37)
Canonical SPDI:: NC_000012.12:126104341:AGAGA:AGA
Gene:: LINC02359 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000012.12:g.126104343GA[1], NC_000012.11:g.126588889GA[1]

Select item 148923687914.

rs1489236879 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:126095077 (GRCh38)
12:126579623 (GRCh37)
Canonical SPDI:: NC_000012.12:126095076:G:A
Gene:: LINC02359 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.126095077G>A, NC_000012.11:g.126579623G>A

Select item 148887913815.

rs1488879138 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:126099291 (GRCh38)
12:126583837 (GRCh37)
Canonical SPDI:: NC_000012.12:126099290:A:T
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000034/9 (TOPMED)
HGVS:: NC_000012.12:g.126099291A>T, NC_000012.11:g.126583837A>T

Select item 148831676116.

rs1488316761 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:126100171 (GRCh38)
12:126584717 (GRCh37)
Canonical SPDI:: NC_000012.12:126100170:T:C
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.126100171T>C, NC_000012.11:g.126584717T>C

Select item 148829862817.

rs1488298628 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:126094448 (GRCh38)
12:126578994 (GRCh37)
Canonical SPDI:: NC_000012.12:126094447:C:A
Gene:: LINC02359 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.126094448C>A, NC_000012.11:g.126578994C>A

Select item 148826831818.

rs1488268318 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:126099172 (GRCh38)
12:126583718 (GRCh37)
Canonical SPDI:: NC_000012.12:126099171:C:A
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.126099172C>A, NC_000012.11:g.126583718C>A

Select item 148823809019.

rs1488238090 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:126098934 (GRCh38)
12:126583480 (GRCh37)
Canonical SPDI:: NC_000012.12:126098933:A:G
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.126098934A>G, NC_000012.11:g.126583480A>G

Select item 148789811920.

rs1487898119 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:126099836 (GRCh38)
12:126584382 (GRCh37)
Canonical SPDI:: NC_000012.12:126099835:A:G
Gene:: LINC02359 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.126099836A>G, NC_000012.11:g.126584382A>G

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