SNP Links for Gene (Select 101927449) - SNP

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Select item 14914316731.

rs1491431673 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: X:39391377 (GRCh38)
X:39250631 (GRCh37)
Canonical SPDI:: NC_000023.11:39391376:CA:
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00017/2 (ALFA)
-=0.00007/4 (GnomAD)
HGVS:: NC_000023.11:g.39391377_39391378del, NC_000023.10:g.39250631_39250632del

Select item 14912515512.

rs1491251551 has merged into rs5902227 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTT,TTTT,TTTTTT,TTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: X:39382565 (GRCh38)
X:39241819 (GRCh37)
Canonical SPDI:: NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:39382554:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC01282 (Varview), LOC105373176 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0./0 (ALFA)
-=0.425/17 (GENOME_DK)
T=0.4307/1626 (1000Genomes)
HGVS:: NC_000023.11:g.39382565_39382566del, NC_000023.11:g.39382566del, NC_000023.11:g.39382566dup, NC_000023.11:g.39382555_39382566T[13]CTTTTTTTTTTTT[2]T[11], NC_000023.11:g.39382565_39382566dup, NC_000023.11:g.39382563_39382566dup, NC_000023.11:g.39382561_39382566dup, NC_000023.11:g.39382566_39382567insTTTTTTTTTTTTTTTTTTT, NC_000023.11:g.39382566_39382567insTTTTTTTTTTTTTTTTTTTTTTTT, NC_000023.10:g.39241819_39241820del, NC_000023.10:g.39241820del, NC_000023.10:g.39241820dup, NC_000023.10:g.39241809_39241820T[13]CTTTTTTTTTTTT[2]T[11], NC_000023.10:g.39241819_39241820dup, NC_000023.10:g.39241817_39241820dup, NC_000023.10:g.39241815_39241820dup, NC_000023.10:g.39241820_39241821insTTTTTTTTTTTTTTTTTTT, NC_000023.10:g.39241820_39241821insTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14912006023.

rs1491200602 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: X:39382555 (GRCh38)
X:39241810 (GRCh37)
Canonical SPDI:: NC_000023.11:39382555::C
Gene:: LINC01282 (Varview), LOC105373176 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000023.11:g.39382555_39382556insC, NC_000023.10:g.39241809_39241810insC

Select item 14911669494.

rs1491166949 has merged into rs35085287 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA [Show Flanks]
Chromosome:: X:39391386 (GRCh38)
X:39250640 (GRCh37)
Canonical SPDI:: NC_000023.11:39391377:AAAAAAAAAAA:AAAAAAAA,NC_000023.11:39391377:AAAAAAAAAAA:AAAAAAAAA,NC_000023.11:39391377:AAAAAAAAAAA:AAAAAAAAAA,NC_000023.11:39391377:AAAAAAAAAAA:AAAAAAAAAAAA
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
AA=0.2708/13 (Vietnamese)
-=0.425/17 (GENOME_DK)
-=0.4441/1283 (ALSPAC)
-=0.4606/1708 (TWINSUK)
HGVS:: NC_000023.11:g.39391386_39391388del, NC_000023.11:g.39391387_39391388del, NC_000023.11:g.39391388del, NC_000023.11:g.39391388dup, NC_000023.10:g.39250640_39250642del, NC_000023.10:g.39250641_39250642del, NC_000023.10:g.39250642del, NC_000023.10:g.39250642dup

Select item 14904863025.

rs1490486302 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:39367414 (GRCh38)
X:39226668 (GRCh37)
Canonical SPDI:: NC_000023.11:39367413:A:G
Gene:: LINC01282 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000084/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.00001/1 (GnomAD)
G=0.000495/6 (TOMMO)
HGVS:: NC_000023.11:g.39367414A>G, NC_000023.10:g.39226668A>G, NR_110385.1:n.751T>C

Select item 14903984616.

rs1490398461 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:39384511 (GRCh38)
X:39243765 (GRCh37)
Canonical SPDI:: NC_000023.11:39384510:C:T
Gene:: LINC01282 (Varview), LOC105373176 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.39384511C>T, NC_000023.10:g.39243765C>T

Select item 14903563717.

rs1490356371 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:39389878 (GRCh38)
X:39249132 (GRCh37)
Canonical SPDI:: NC_000023.11:39389877:C:T
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.39389878C>T, NC_000023.10:g.39249132C>T

Select item 14902614718.

rs1490261471 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: X:39382567 (GRCh38)
X:39241821 (GRCh37)
Canonical SPDI:: NC_000023.11:39382566:C:
Gene:: LINC01282 (Varview), LOC105373176 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000023.11:g.39382567del, NC_000023.10:g.39241821del

Select item 14902261809.

rs1490226180 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:39369534 (GRCh38)
X:39228788 (GRCh37)
Canonical SPDI:: NC_000023.11:39369533:C:T
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.39369534C>T, NC_000023.10:g.39228788C>T

Select item 149019238310.

rs1490192383 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:39390604 (GRCh38)
X:39249858 (GRCh37)
Canonical SPDI:: NC_000023.11:39390603:C:T
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.39390604C>T, NC_000023.10:g.39249858C>T

Select item 148981499711.

rs1489814997 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:39391975 (GRCh38)
X:39251229 (GRCh37)
Canonical SPDI:: NC_000023.11:39391974:T:C
Gene:: LINC01282 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000034/9 (TOPMED)
HGVS:: NC_000023.11:g.39391975T>C, NC_000023.10:g.39251229T>C

Select item 148979254212.

rs1489792542 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:39380299 (GRCh38)
X:39239553 (GRCh37)
Canonical SPDI:: NC_000023.11:39380298:T:C
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.39380299T>C, NC_000023.10:g.39239553T>C

Select item 148977205813.

rs1489772058 [Homo sapiens]

Variant type:: DEL
Alleles:: GCATGGA>- [Show Flanks]
Chromosome:: X:39374008 (GRCh38)
X:39233262 (GRCh37)
Canonical SPDI:: NC_000023.11:39374007:GCATGGA:
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.0009/4 (ALFA)
HGVS:: NC_000023.11:g.39374008_39374014del, NC_000023.10:g.39233262_39233268del

Select item 148971958614.

rs1489719586 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:39381750 (GRCh38)
X:39241004 (GRCh37)
Canonical SPDI:: NC_000023.11:39381749:T:C
Gene:: LINC01282 (Varview), LOC105373176 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000142/2 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.39381750T>C, NC_000023.10:g.39241004T>C

Select item 148932857815.

rs1489328578 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:39392157 (GRCh38)
X:39251411 (GRCh37)
Canonical SPDI:: NC_000023.11:39392156:A:G
Gene:: LINC01282 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.39392157A>G, NC_000023.10:g.39251411A>G

Select item 148921954816.

rs1489219548 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:39368887 (GRCh38)
X:39228141 (GRCh37)
Canonical SPDI:: NC_000023.11:39368886:A:C
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.39368887A>C, NC_000023.10:g.39228141A>C

Select item 148917488317.

rs1489174883 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:39375887 (GRCh38)
X:39235141 (GRCh37)
Canonical SPDI:: NC_000023.11:39375886:C:T
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.39375887C>T, NC_000023.10:g.39235141C>T

Select item 148902484018.

rs1489024840 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:39370336 (GRCh38)
X:39229590 (GRCh37)
Canonical SPDI:: NC_000023.11:39370335:A:G
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.39370336A>G, NC_000023.10:g.39229590A>G

Select item 148895686319.

rs1488956863 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:39391312 (GRCh38)
X:39250566 (GRCh37)
Canonical SPDI:: NC_000023.11:39391311:G:A
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.39391312G>A, NC_000023.10:g.39250566G>A

Select item 148883956220.

rs1488839562 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: X:39390651 (GRCh38)
X:39249905 (GRCh37)
Canonical SPDI:: NC_000023.11:39390650:T:C,NC_000023.11:39390650:T:G
Gene:: LINC01282 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.39390651T>C, NC_000023.11:g.39390651T>G, NC_000023.10:g.39249905T>C, NC_000023.10:g.39249905T>G

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