SNP Links for Gene (Select 101927334) - SNP

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Items: 1 to 20 of 4683

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Select item 14913494521.

rs1491349452 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 16:51020599 (GRCh38)
16:51054510 (GRCh37)
Canonical SPDI:: NC_000016.10:51020598:TG:
Gene:: LINC02127 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.00002/1 (GnomAD)
HGVS:: NC_000016.10:g.51020599_51020600del, NC_000016.9:g.51054510_51054511del

Select item 14913329492.

rs1491332949 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 16:51033065 (GRCh38)
16:51066976 (GRCh37)
Canonical SPDI:: NC_000016.10:51033064:AT:
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000253/3 (ALFA)
-=0.000383/43 (GnomAD)
HGVS:: NC_000016.10:g.51033065_51033066del, NC_000016.9:g.51066976_51066977del

Select item 14912810583.

rs1491281058 has merged into rs34513209 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTTTTT [Show Flanks]
Chromosome:: 16:51033078 (GRCh38)
16:51066989 (GRCh37)
Canonical SPDI:: NC_000016.10:51033065:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000016.10:51033065:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000016.10:51033065:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000016.10:51033065:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000016.10:51033065:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.21825/1093 (1000Genomes)
-=0.22003/848 (ALSPAC)
-=0.22333/134 (NorthernSweden)
-=0.22789/845 (TWINSUK)
-=0.375/15 (GENOME_DK)
HGVS:: NC_000016.10:g.51033078_51033079del, NC_000016.10:g.51033079del, NC_000016.10:g.51033079dup, NC_000016.10:g.51033078_51033079dup, NC_000016.10:g.51033074_51033079dup, NC_000016.9:g.51066989_51066990del, NC_000016.9:g.51066990del, NC_000016.9:g.51066990dup, NC_000016.9:g.51066989_51066990dup, NC_000016.9:g.51066985_51066990dup

Select item 14912250524.

rs1491225052 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GA [Show Flanks]
Chromosome:: 16:51020599 (GRCh38)
16:51054511 (GRCh37)
Canonical SPDI:: NC_000016.10:51020599:GA:GAGA
Gene:: LINC02127 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GAGA=0./0 (ALFA)
GA=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.51020600_51020601dup, NC_000016.9:g.51054511_51054512dup

Select item 14912078685.

rs1491207868 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 16:51020600 (GRCh38)
16:51054511 (GRCh37)
Canonical SPDI:: NC_000016.10:51020599:GA:
Gene:: LINC02127 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00006/2 (GnomAD)
HGVS:: NC_000016.10:g.51020600_51020601del, NC_000016.9:g.51054511_51054512del

Select item 14908652166.

rs1490865216 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:51016914 (GRCh38)
16:51050825 (GRCh37)
Canonical SPDI:: NC_000016.10:51016913:A:G
Gene:: LINC02127 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.51016914A>G, NC_000016.9:g.51050825A>G

Select item 14905218987.

rs1490521898 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:51036222 (GRCh38)
16:51070133 (GRCh37)
Canonical SPDI:: NC_000016.10:51036221:T:A
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.51036222T>A, NC_000016.9:g.51070133T>A

Select item 14904295758.

rs1490429575 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:51018384 (GRCh38)
16:51052295 (GRCh37)
Canonical SPDI:: NC_000016.10:51018383:C:T
Gene:: LINC02127 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.51018384C>T, NC_000016.9:g.51052295C>T

Select item 14903763549.

rs1490376354 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:51032071 (GRCh38)
16:51065982 (GRCh37)
Canonical SPDI:: NC_000016.10:51032070:G:T
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.51032071G>T, NC_000016.9:g.51065982G>T

Select item 149027670610.

rs1490276706 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:51024038 (GRCh38)
16:51057949 (GRCh37)
Canonical SPDI:: NC_000016.10:51024037:A:G
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000016.10:g.51024038A>G, NC_000016.9:g.51057949A>G

Select item 149005153411.

rs1490051534 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:51031080 (GRCh38)
16:51064991 (GRCh37)
Canonical SPDI:: NC_000016.10:51031079:C:A
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000045/12 (TOPMED)
HGVS:: NC_000016.10:g.51031080C>A, NC_000016.9:g.51064991C>A

Select item 149003885212.

rs1490038852 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:51016591 (GRCh38)
16:51050502 (GRCh37)
Canonical SPDI:: NC_000016.10:51016590:T:C
Gene:: LINC02127 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.51016591T>C, NC_000016.9:g.51050502T>C

Select item 148991044313.

rs1489910443 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>G
Chromosome:: no mapping
Canonical SPDI:

Select item 148988716614.

rs1489887166 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GAGAGA [Show Flanks]
Chromosome:: 16:51031575 (GRCh38)
16:51065486 (GRCh37)
Canonical SPDI:: NC_000016.10:51031568:GAGAGAGAGA:GAGAGA,NC_000016.10:51031568:GAGAGAGAGA:GAGAGAGAGAGA
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAGAGAGAGA=0./0 (ALFA)
-=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.51031569GA[3], NC_000016.10:g.51031569GA[6], NC_000016.9:g.51065480GA[3], NC_000016.9:g.51065480GA[6]

Select item 148973174315.

rs1489731743 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:51030204 (GRCh38)
16:51064115 (GRCh37)
Canonical SPDI:: NC_000016.10:51030203:C:A
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.51030204C>A, NC_000016.9:g.51064115C>A

Select item 148938519316.

rs1489385193 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:51023304 (GRCh38)
16:51057215 (GRCh37)
Canonical SPDI:: NC_000016.10:51023303:A:G
Gene:: LINC02127 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.51023304A>G, NC_000016.9:g.51057215A>G, NG_053216.1:g.1005A>G

Select item 148931525717.

rs1489315257 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:51029916 (GRCh38)
16:51063827 (GRCh37)
Canonical SPDI:: NC_000016.10:51029915:T:C
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.51029916T>C, NC_000016.9:g.51063827T>C

Select item 148902733018.

rs1489027330 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 16:51022088 (GRCh38)
16:51055999 (GRCh37)
Canonical SPDI:: NC_000016.10:51022087:AA:A
Gene:: LINC02127 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0.000224/1 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.51022089del, NC_000016.9:g.51056000del

Select item 148897543119.

rs1488975431 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 16:51031696 (GRCh38)
16:51065607 (GRCh37)
Canonical SPDI:: NC_000016.10:51031695:T:A,NC_000016.10:51031695:T:C
Gene:: LINC02127 (Varview), LOC107984903 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.51031696T>A, NC_000016.10:g.51031696T>C, NC_000016.9:g.51065607T>A, NC_000016.9:g.51065607T>C

Select item 148847285820.

rs1488472858 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:51023542 (GRCh38)
16:51057453 (GRCh37)
Canonical SPDI:: NC_000016.10:51023541:C:T
Gene:: LINC02127 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.51023542C>T, NC_000016.9:g.51057453C>T, NG_053216.1:g.1243C>T

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