SNP Links for Gene (Select 101927176) - SNP

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Select item 14911936391.

rs1491193639 has merged into rs145357823 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGT>-,GT,GTGTGT,GTGTGTGT,GTGTGTGTGT [Show Flanks]
Chromosome:: 13:77991728 (GRCh38)
13:78565863 (GRCh37)
Canonical SPDI:: NC_000013.11:77991714:TGTGTGTGTGTGTGTGT:TGTGTGTGTGTGT,NC_000013.11:77991714:TGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000013.11:77991714:TGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGT,NC_000013.11:77991714:TGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGT,NC_000013.11:77991714:TGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGT
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGT=0.00021/3 (ALFA)
TG=0.03557/9 (1000Genomes)
TG=0.15/6 (GENOME_DK)
HGVS:: NC_000013.11:g.77991716GT[6], NC_000013.11:g.77991716GT[7], NC_000013.11:g.77991716GT[9], NC_000013.11:g.77991716GT[10], NC_000013.11:g.77991716GT[11], NC_000013.10:g.78565851GT[6], NC_000013.10:g.78565851GT[7], NC_000013.10:g.78565851GT[9], NC_000013.10:g.78565851GT[10], NC_000013.10:g.78565851GT[11]

Select item 14908325782.

rs1490832578 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:77994560 (GRCh38)
13:78568695 (GRCh37)
Canonical SPDI:: NC_000013.11:77994559:T:C
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.77994560T>C, NC_000013.10:g.78568695T>C

Select item 14908281033.

rs1490828103 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 13:77996748 (GRCh38)
13:78570883 (GRCh37)
Canonical SPDI:: NC_000013.11:77996747:A:G,NC_000013.11:77996747:A:T
Gene:: LINC01069 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.77996748A>G, NC_000013.11:g.77996748A>T, NC_000013.10:g.78570883A>G, NC_000013.10:g.78570883A>T

Select item 14908125104.

rs1490812510 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:77994936 (GRCh38)
13:78569071 (GRCh37)
Canonical SPDI:: NC_000013.11:77994935:T:G
Gene:: LINC01069 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.00001/1 (GnomAD)
G=0.000684/2 (KOREAN)
HGVS:: NC_000013.11:g.77994936T>G, NC_000013.10:g.78569071T>G

Select item 14904159125.

rs1490415912 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:77986296 (GRCh38)
13:78560431 (GRCh37)
Canonical SPDI:: NC_000013.11:77986295:A:C
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000029/4 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000013.11:g.77986296A>C, NC_000013.10:g.78560431A>C

Select item 14900667146.

rs1490066714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:77980041 (GRCh38)
13:78554176 (GRCh37)
Canonical SPDI:: NC_000013.11:77980040:A:G
Gene:: LINC01069 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.77980041A>G, NC_000013.10:g.78554176A>G, NR_108076.1:n.2340T>C

Select item 14900401517.

rs1490040151 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:77988228 (GRCh38)
13:78562363 (GRCh37)
Canonical SPDI:: NC_000013.11:77988227:A:C
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.77988228A>C, NC_000013.10:g.78562363A>C

Select item 14899031728.

rs1489903172 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:77981288 (GRCh38)
13:78555423 (GRCh37)
Canonical SPDI:: NC_000013.11:77981287:A:G
Gene:: LINC01069 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.77981288A>G, NC_000013.10:g.78555423A>G, NR_108076.1:n.1093T>C

Select item 14899026559.

rs1489902655 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:77995615 (GRCh38)
13:78569750 (GRCh37)
Canonical SPDI:: NC_000013.11:77995614:A:C
Gene:: LINC01069 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.77995615A>C, NC_000013.10:g.78569750A>C

Select item 148983545910.

rs1489835459 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:77996418 (GRCh38)
13:78570553 (GRCh37)
Canonical SPDI:: NC_000013.11:77996417:G:A
Gene:: LINC01069 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.77996418G>A, NC_000013.10:g.78570553G>A

Select item 148979147811.

rs1489791478 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:77984870 (GRCh38)
13:78559005 (GRCh37)
Canonical SPDI:: NC_000013.11:77984869:G:T
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000019/5 (TOPMED)
T=0.00046/8 (TOMMO)
T=0.000684/2 (KOREAN)
HGVS:: NC_000013.11:g.77984870G>T, NC_000013.10:g.78559005G>T

Select item 148941789412.

rs1489417894 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:77993583 (GRCh38)
13:78567718 (GRCh37)
Canonical SPDI:: NC_000013.11:77993582:A:G
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.77993583A>G, NC_000013.10:g.78567718A>G

Select item 148928615213.

rs1489286152 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:77996118 (GRCh38)
13:78570253 (GRCh37)
Canonical SPDI:: NC_000013.11:77996117:G:A
Gene:: LINC01069 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.77996118G>A, NC_000013.10:g.78570253G>A

Select item 148897667414.

rs1488976674 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 13:77989358 (GRCh38)
13:78563493 (GRCh37)
Canonical SPDI:: NC_000013.11:77989357:CC:C
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.77989359del, NC_000013.10:g.78563494del

Select item 148837330215.

rs1488373302 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 13:77996034 (GRCh38)
13:78570170 (GRCh37)
Canonical SPDI:: NC_000013.11:77996034:A:AA
Gene:: LINC01069 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.77996035dup, NC_000013.10:g.78570170dup

Select item 148804681816.

rs1488046818 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:77983988 (GRCh38)
13:78558123 (GRCh37)
Canonical SPDI:: NC_000013.11:77983987:T:C
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.77983988T>C, NC_000013.10:g.78558123T>C

Select item 148795361217.

rs1487953612 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:77981087 (GRCh38)
13:78555222 (GRCh37)
Canonical SPDI:: NC_000013.11:77981086:A:G
Gene:: LINC01069 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000546/1 (Korea1K)
HGVS:: NC_000013.11:g.77981087A>G, NC_000013.10:g.78555222A>G, NR_108076.1:n.1294T>C

Select item 148784151518.

rs1487841515 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:77982337 (GRCh38)
13:78556472 (GRCh37)
Canonical SPDI:: NC_000013.11:77982336:C:A
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000031/4 (GnomAD)
HGVS:: NC_000013.11:g.77982337C>A, NC_000013.10:g.78556472C>A

Select item 148701573019.

rs1487015730 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:77989217 (GRCh38)
13:78563352 (GRCh37)
Canonical SPDI:: NC_000013.11:77989216:T:A
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000013.11:g.77989217T>A, NC_000013.10:g.78563352T>A

Select item 148692742920.

rs1486927429 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:77991152 (GRCh38)
13:78565287 (GRCh37)
Canonical SPDI:: NC_000013.11:77991151:G:C
Gene:: LINC01069 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.77991152G>C, NC_000013.10:g.78565287G>C

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