SNP Links for Gene (Select 101154644) - SNP

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Select item 14914691201.

rs1491469120 has merged into rs75277676 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 6:52149709 (GRCh38)
6:52014507 (GRCh37)
Canonical SPDI:: NC_000006.12:52149708:TTTTTTTT:TTTTTTT,NC_000006.12:52149708:TTTTTTTT:TTTTTTTTT
Gene:: LINCMD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0.012138/183 (ALFA)
-=0.000142/2 (TOMMO)
-=0.031387/157 (1000Genomes)
-=0.035/21 (NorthernSweden)
-=0.041536/186 (Estonian)
-=0.044826/11865 (TOPMED)
-=0.069138/69 (GoNL)
-=0.1/4 (GENOME_DK)
HGVS:: NC_000006.12:g.52149716del, NC_000006.12:g.52149716dup, NC_000006.11:g.52014514del, NC_000006.11:g.52014514dup

Select item 14909145852.

rs1490914585 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 6:52151789 (GRCh38)
6:52016587 (GRCh37)
Canonical SPDI:: NC_000006.12:52151788:T:
Gene:: LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52151789del, NC_000006.11:g.52016587del

Select item 14907865453.

rs1490786545 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:52152804 (GRCh38)
6:52017602 (GRCh37)
Canonical SPDI:: NC_000006.12:52152803:C:T
Gene:: LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.52152804C>T, NC_000006.11:g.52017602C>T, NG_074230.1:g.54C>T

Select item 14906482754.

rs1490648275 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:52148872 (GRCh38)
6:52013670 (GRCh37)
Canonical SPDI:: NC_000006.12:52148871:A:T
Gene:: MIR133B (Varview), LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52148872A>T, NC_000006.11:g.52013670A>T

Select item 14906219815.

rs1490621981 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:52152265 (GRCh38)
6:52017063 (GRCh37)
Canonical SPDI:: NC_000006.12:52152264:G:A
Gene:: LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.52152265G>A, NC_000006.11:g.52017063G>A

Select item 14906028426.

rs1490602842 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 6:52148666 (GRCh38)
6:52013464 (GRCh37)
Canonical SPDI:: NC_000006.12:52148665:A:G,NC_000006.12:52148665:A:T
Gene:: MIR133B (Varview), LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.52148666A>G, NC_000006.12:g.52148666A>T, NC_000006.11:g.52013464A>G, NC_000006.11:g.52013464A>T

Select item 14898558187.

rs1489855818 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:52147547 (GRCh38)
6:52012345 (GRCh37)
Canonical SPDI:: NC_000006.12:52147546:G:T
Gene:: MIR133B (Varview), LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
HGVS:: NC_000006.12:g.52147547G>T, NC_000006.11:g.52012345G>T

Select item 14897746658.

rs1489774665 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:52149791 (GRCh38)
6:52014589 (GRCh37)
Canonical SPDI:: NC_000006.12:52149790:T:G
Gene:: LINCMD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000108/2 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
G=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.52149791T>G, NC_000006.11:g.52014589T>G

Select item 14895068359.

rs1489506835 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:52150833 (GRCh38)
6:52015631 (GRCh37)
Canonical SPDI:: NC_000006.12:52150832:T:A
Gene:: LINCMD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52150833T>A, NC_000006.11:g.52015631T>A

Select item 148817389010.

rs1488173890 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:52150976 (GRCh38)
6:52015774 (GRCh37)
Canonical SPDI:: NC_000006.12:52150975:G:T
Gene:: LINCMD1 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000006.12:g.52150976G>T, NC_000006.11:g.52015774G>T, NR_131248.1:n.48C>A

Select item 148769912711.

rs1487699127 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52146626 (GRCh38)
6:52011424 (GRCh37)
Canonical SPDI:: NC_000006.12:52146625:A:G
Gene:: LINCMD1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52146626A>G, NC_000006.11:g.52011424A>G

Select item 148763245012.

rs1487632450 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:52151901 (GRCh38)
6:52016699 (GRCh37)
Canonical SPDI:: NC_000006.12:52151900:G:A
Gene:: LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52151901G>A, NC_000006.11:g.52016699G>A

Select item 148755337413.

rs1487553374 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52149930 (GRCh38)
6:52014728 (GRCh37)
Canonical SPDI:: NC_000006.12:52149929:A:G
Gene:: LINCMD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.52149930A>G, NC_000006.11:g.52014728A>G

Select item 148754245414.

rs1487542454 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:52152636 (GRCh38)
6:52017434 (GRCh37)
Canonical SPDI:: NC_000006.12:52152635:C:T
Gene:: LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.52152636C>T, NC_000006.11:g.52017434C>T

Select item 148750725915.

rs1487507259 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:52148975 (GRCh38)
6:52013773 (GRCh37)
Canonical SPDI:: NC_000006.12:52148974:T:C
Gene:: MIR133B (Varview), LINCMD1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000006.12:g.52148975T>C, NC_000006.11:g.52013773T>C, NR_029903.1:n.53T>C

Select item 148661224916.

rs1486612249 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:52152080 (GRCh38)
6:52016878 (GRCh37)
Canonical SPDI:: NC_000006.12:52152079:G:A
Gene:: LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00386/63 (ALFA)
A=0.02772/81 (KOREAN)
HGVS:: NC_000006.12:g.52152080G>A, NC_000006.11:g.52016878G>A

Select item 148653972417.

rs1486539724 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:52147348 (GRCh38)
6:52012146 (GRCh37)
Canonical SPDI:: NC_000006.12:52147347:A:C
Gene:: MIR133B (Varview), LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.52147348A>C, NC_000006.11:g.52012146A>C

Select item 148639838618.

rs1486398386 [Homo sapiens]

Variant type:: DEL
Alleles:: TGTT>- [Show Flanks]
Chromosome:: 6:52148545 (GRCh38)
6:52013343 (GRCh37)
Canonical SPDI:: NC_000006.12:52148544:TGTT:
Gene:: MIR133B (Varview), LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52148545_52148548del, NC_000006.11:g.52013343_52013346del

Select item 148532845719.

rs1485328457 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:52147750 (GRCh38)
6:52012548 (GRCh37)
Canonical SPDI:: NC_000006.12:52147749:T:C
Gene:: MIR133B (Varview), LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.52147750T>C, NC_000006.11:g.52012548T>C

Select item 148471225620.

rs1484712256 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:52152148 (GRCh38)
6:52016946 (GRCh37)
Canonical SPDI:: NC_000006.12:52152147:G:T
Gene:: LINCMD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52152148G>T, NC_000006.11:g.52016946G>T

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