SNP Links for Gene (Select 100996665) - SNP

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Items: 1 to 20 of 5841

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Select item 14911888441.

rs1491188844 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 19:32043490 (GRCh38)
19:32534396 (GRCh37)
Canonical SPDI:: NC_000019.10:32043488:TCT:T
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.05058/814 (ALFA)
-=0.025/1 (GENOME_DK)
-=0.04021/60 (Korea1K)
-=0.04296/593 (TOMMO)
-=0.05442/32 (NorthernSweden)
-=0.08118/301 (TWINSUK)
-=0.08537/329 (ALSPAC)
-=0.09337/6773 (GnomAD)
HGVS:: NC_000019.10:g.32043490_32043491del, NC_000019.9:g.32534396_32534397del

Select item 14909557172.

rs1490955717 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:32038931 (GRCh38)
19:32529837 (GRCh37)
Canonical SPDI:: NC_000019.10:32038930:C:T
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.32038931C>T, NC_000019.9:g.32529837C>T

Select item 14909202553.

rs1490920255 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 19:32047220 (GRCh38)
19:32538126 (GRCh37)
Canonical SPDI:: NC_000019.10:32047219:CCCC:CCC
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.32047223del, NC_000019.9:g.32538129del

Select item 14908952394.

rs1490895239 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:32046971 (GRCh38)
19:32537877 (GRCh37)
Canonical SPDI:: NC_000019.10:32046970:A:C
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.32046971A>C, NC_000019.9:g.32537877A>C

Select item 14908815235.

rs1490881523 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:32024393 (GRCh38)
19:32515299 (GRCh37)
Canonical SPDI:: NC_000019.10:32024392:C:A,NC_000019.10:32024392:C:T
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000071/2 (TOMMO)
HGVS:: NC_000019.10:g.32024393C>A, NC_000019.10:g.32024393C>T, NC_000019.9:g.32515299C>A, NC_000019.9:g.32515299C>T

Select item 14908298526.

rs1490829852 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:32032179 (GRCh38)
19:32523085 (GRCh37)
Canonical SPDI:: NC_000019.10:32032178:T:A
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.32032179T>A, NC_000019.9:g.32523085T>A

Select item 14907309347.

rs1490730934 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:32039798 (GRCh38)
19:32530704 (GRCh37)
Canonical SPDI:: NC_000019.10:32039797:G:T
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000038/10 (TOPMED)
HGVS:: NC_000019.10:g.32039798G>T, NC_000019.9:g.32530704G>T, NR_110673.1:n.762G>T, NR_110674.1:n.606G>T

Select item 14906099838.

rs1490609983 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:32029324 (GRCh38)
19:32520230 (GRCh37)
Canonical SPDI:: NC_000019.10:32029323:A:C
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.32029324A>C, NC_000019.9:g.32520230A>C

Select item 14905919299.

rs1490591929 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:32031531 (GRCh38)
19:32522437 (GRCh37)
Canonical SPDI:: NC_000019.10:32031530:A:G
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (KOREAN)
G=0.000004/1 (TOPMED)
G=0.000389/7 (TOMMO)
HGVS:: NC_000019.10:g.32031531A>G, NC_000019.9:g.32522437A>G

Select item 149053811210.

rs1490538112 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAAAAACAA>- [Show Flanks]
Chromosome:: 19:32032372 (GRCh38)
19:32523278 (GRCh37)
Canonical SPDI:: NC_000019.10:32032369:AAAAAAAAAAAAAAAAAAAACAA:AA
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000019.10:g.32032372_32032392del, NC_000019.9:g.32523278_32523298del

Select item 149039010511.

rs1490390105 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:32024846 (GRCh38)
19:32515752 (GRCh37)
Canonical SPDI:: NC_000019.10:32024845:T:C
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000142/2 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.32024846T>C, NC_000019.9:g.32515752T>C

Select item 149033839812.

rs1490338398 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:32032810 (GRCh38)
19:32523716 (GRCh37)
Canonical SPDI:: NC_000019.10:32032809:C:T
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.32032810C>T, NC_000019.9:g.32523716C>T

Select item 149025829313.

rs1490258293 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:32027712 (GRCh38)
19:32518618 (GRCh37)
Canonical SPDI:: NC_000019.10:32027711:G:A,NC_000019.10:32027711:G:C
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
C=0.008197/15 (Korea1K)
HGVS:: NC_000019.10:g.32027712G>A, NC_000019.10:g.32027712G>C, NC_000019.9:g.32518618G>A, NC_000019.9:g.32518618G>C

Select item 149023968814.

rs1490239688 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:32040266 (GRCh38)
19:32531172 (GRCh37)
Canonical SPDI:: NC_000019.10:32040265:C:T
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.32040266C>T, NC_000019.9:g.32531172C>T

Select item 149010240215.

rs1490102402 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:32031969 (GRCh38)
19:32522875 (GRCh37)
Canonical SPDI:: NC_000019.10:32031968:C:T
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.32031969C>T, NC_000019.9:g.32522875C>T

Select item 148994991116.

rs1489949911 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:32026028 (GRCh38)
19:32516934 (GRCh37)
Canonical SPDI:: NC_000019.10:32026027:T:C
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.32026028T>C, NC_000019.9:g.32516934T>C

Select item 148930456517.

rs1489304565 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAGT>- [Show Flanks]
Chromosome:: 19:32036109 (GRCh38)
19:32527015 (GRCh37)
Canonical SPDI:: NC_000019.10:32036105:AGTTAGT:AGT
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.32036109_32036112del, NC_000019.9:g.32527015_32527018del

Select item 148926491018.

rs1489264910 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:32028295 (GRCh38)
19:32519201 (GRCh37)
Canonical SPDI:: NC_000019.10:32028294:T:A
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.32028295T>A, NC_000019.9:g.32519201T>A

Select item 148919408919.

rs1489194089 [Homo sapiens]

Variant type:: DEL
Alleles:: GAC>- [Show Flanks]
Chromosome:: 19:32045587 (GRCh38)
19:32536493 (GRCh37)
Canonical SPDI:: NC_000019.10:32045586:GAC:
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.32045587_32045589del, NC_000019.9:g.32536493_32536495del

Select item 148905582120.

rs1489055821 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:32029378 (GRCh38)
19:32520284 (GRCh37)
Canonical SPDI:: NC_000019.10:32029377:T:C
Gene:: LINC01533 (Varview), LINC01837 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.32029378T>C, NC_000019.9:g.32520284T>C

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