SNP Links for Gene (Select 100996635) - SNP

Links from Gene

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Select item 14914741211.

rs1491474121 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:95509568 (GRCh38)
1:95975125 (GRCh37)
Canonical SPDI:: NC_000001.11:95509568:C:CC
Gene:: LINC02607 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000001.11:g.95509569dup, NC_000001.10:g.95975125dup

Select item 14913226082.

rs1491322608 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:95509569 (GRCh38)
1:95975125 (GRCh37)
Canonical SPDI:: NC_000001.11:95509567:ACA:A
Gene:: LINC02607 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.002756/45 (ALFA)
-=0.001092/2 (Korea1K)
-=0.001392/23 (TOMMO)
-=0.003724/506 (GnomAD)
HGVS:: NC_000001.11:g.95509569_95509570del, NC_000001.10:g.95975125_95975126del

Select item 14908119213.

rs1490811921 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:95514056 (GRCh38)
1:95979612 (GRCh37)
Canonical SPDI:: NC_000001.11:95514055:A:G
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.95514056A>G, NC_000001.10:g.95979612A>G

Select item 14907963684.

rs1490796368 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:95515217 (GRCh38)
1:95980773 (GRCh37)
Canonical SPDI:: NC_000001.11:95515216:T:C
Gene:: LINC02607 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.95515217T>C, NC_000001.10:g.95980773T>C, NR_110621.1:n.1417T>C, NR_110622.1:n.1314T>C

Select item 14906483805.

rs1490648380 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:95514594 (GRCh38)
1:95980150 (GRCh37)
Canonical SPDI:: NC_000001.11:95514593:T:C
Gene:: LINC02607 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.95514594T>C, NC_000001.10:g.95980150T>C, NR_110621.1:n.794T>C, NR_110622.1:n.691T>C

Select item 14906285176.

rs1490628517 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:95515704 (GRCh38)
1:95981260 (GRCh37)
Canonical SPDI:: NC_000001.11:95515703:T:A
Gene:: LINC02607 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
A=0.000071/1 (TOMMO)
HGVS:: NC_000001.11:g.95515704T>A, NC_000001.10:g.95981260T>A

Select item 14900990657.

rs1490099065 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 1:95515798 (GRCh38)
1:95981354 (GRCh37)
Canonical SPDI:: NC_000001.11:95515797:TTTT:TTT
Gene:: LINC02607 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.95515801del, NC_000001.10:g.95981357del

Select item 14898326818.

rs1489832681 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:95515133 (GRCh38)
1:95980689 (GRCh37)
Canonical SPDI:: NC_000001.11:95515132:C:A
Gene:: LINC02607 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.95515133C>A, NC_000001.10:g.95980689C>A, NR_110621.1:n.1333C>A, NR_110622.1:n.1230C>A

Select item 14889260479.

rs1488926047 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:95512260 (GRCh38)
1:95977816 (GRCh37)
Canonical SPDI:: NC_000001.11:95512259:C:G
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.95512260C>G, NC_000001.10:g.95977816C>G

Select item 148885427710.

rs1488854277 has merged into rs1294463590 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 1:95513549 (GRCh38)
1:95979105 (GRCh37)
Canonical SPDI:: NC_000001.11:95513548:TTTTTTT:TTTTTT,NC_000001.11:95513548:TTTTTTT:TTTTTTTT
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.95513555del, NC_000001.11:g.95513555dup, NC_000001.10:g.95979111del, NC_000001.10:g.95979111dup

Select item 148851122711.

rs1488511227 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:95508118 (GRCh38)
1:95973674 (GRCh37)
Canonical SPDI:: NC_000001.11:95508117:C:T
Gene:: LINC02607 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.95508118C>T, NC_000001.10:g.95973674C>T

Select item 148836146212.

rs1488361462 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:95513176 (GRCh38)
1:95978732 (GRCh37)
Canonical SPDI:: NC_000001.11:95513175:A:C
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.95513176A>C, NC_000001.10:g.95978732A>C

Select item 148752094713.

rs1487520947 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:95513131 (GRCh38)
1:95978687 (GRCh37)
Canonical SPDI:: NC_000001.11:95513130:T:C
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000001.11:g.95513131T>C, NC_000001.10:g.95978687T>C

Select item 148719607814.

rs1487196078 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:95513923 (GRCh38)
1:95979479 (GRCh37)
Canonical SPDI:: NC_000001.11:95513922:C:A
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.95513923C>A, NC_000001.10:g.95979479C>A

Select item 148706396515.

rs1487063965 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:95508969 (GRCh38)
1:95974525 (GRCh37)
Canonical SPDI:: NC_000001.11:95508968:T:C
Gene:: LINC02607 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.95508969T>C, NC_000001.10:g.95974525T>C

Select item 148703376516.

rs1487033765 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:95509870 (GRCh38)
1:95975426 (GRCh37)
Canonical SPDI:: NC_000001.11:95509869:T:C
Gene:: LINC02607 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.95509870T>C, NC_000001.10:g.95975426T>C

Select item 148697202517.

rs1486972025 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 1:95513378 (GRCh38)
1:95978934 (GRCh37)
Canonical SPDI:: NC_000001.11:95513377:G:
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.95513378del, NC_000001.10:g.95978934del

Select item 148654794418.

rs1486547944 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:95509077 (GRCh38)
1:95974633 (GRCh37)
Canonical SPDI:: NC_000001.11:95509076:A:G
Gene:: LINC02607 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.95509077A>G, NC_000001.10:g.95974633A>G

Select item 148532982219.

rs1485329822 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:95511949 (GRCh38)
1:95977505 (GRCh37)
Canonical SPDI:: NC_000001.11:95511948:G:A
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000001.11:g.95511949G>A, NC_000001.10:g.95977505G>A

Select item 148507512820.

rs1485075128 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:95510809 (GRCh38)
1:95976365 (GRCh37)
Canonical SPDI:: NC_000001.11:95510808:A:C
Gene:: LINC02607 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000001.11:g.95510809A>C, NC_000001.10:g.95976365A>C

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