SNP Links for Gene (Select 100996624) - SNP

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Select item 14906994021.

rs1490699402 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:27834817 (GRCh38)
3:27876308 (GRCh37)
Canonical SPDI:: NC_000003.12:27834816:T:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.27834817T>G, NC_000003.11:g.27876308T>G

Select item 14902306912.

rs1490230691 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 3:27833157 (GRCh38)
3:27874648 (GRCh37)
Canonical SPDI:: NC_000003.12:27833156:C:G,NC_000003.12:27833156:C:T
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000106/3 (TOMMO)
HGVS:: NC_000003.12:g.27833157C>G, NC_000003.12:g.27833157C>T, NC_000003.11:g.27874648C>G, NC_000003.11:g.27874648C>T, NR_132438.1:n.564G>C, NR_132438.1:n.564G>A

Select item 14891485173.

rs1489148517 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:27836014 (GRCh38)
3:27877505 (GRCh37)
Canonical SPDI:: NC_000003.12:27836013:T:C
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.27836014T>C, NC_000003.11:g.27877505T>C

Select item 14872078334.

rs1487207833 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:27831012 (GRCh38)
3:27872503 (GRCh37)
Canonical SPDI:: NC_000003.12:27831011:G:A
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.27831012G>A, NC_000003.11:g.27872503G>A, NR_132438.1:n.2709C>T

Select item 14871762235.

rs1487176223 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:27832183 (GRCh38)
3:27873674 (GRCh37)
Canonical SPDI:: NC_000003.12:27832182:T:A
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.27832183T>A, NC_000003.11:g.27873674T>A, NR_132438.1:n.1538A>T

Select item 14862026636.

rs1486202663 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:27831624 (GRCh38)
3:27873115 (GRCh37)
Canonical SPDI:: NC_000003.12:27831623:T:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.27831624T>G, NC_000003.11:g.27873115T>G, NR_132438.1:n.2097A>C

Select item 14859267047.

rs1485926704 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGA>- [Show Flanks]
Chromosome:: 3:27833834 (GRCh38)
3:27875325 (GRCh37)
Canonical SPDI:: NC_000003.12:27833830:AGAAGA:AGA
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AGAAGA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.27833831AGA[1], NC_000003.11:g.27875322AGA[1]

Select item 14858985898.

rs1485898589 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:27834955 (GRCh38)
3:27876446 (GRCh37)
Canonical SPDI:: NC_000003.12:27834954:T:A
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.27834955T>A, NC_000003.11:g.27876446T>A

Select item 14849720809.

rs1484972080 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:27830628 (GRCh38)
3:27872119 (GRCh37)
Canonical SPDI:: NC_000003.12:27830627:G:A
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.27830628G>A, NC_000003.11:g.27872119G>A

Select item 148178749310.

rs1481787493 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:27835900 (GRCh38)
3:27877391 (GRCh37)
Canonical SPDI:: NC_000003.12:27835899:A:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.27835900A>G, NC_000003.11:g.27877391A>G

Select item 148178114311.

rs1481781143 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:27835267 (GRCh38)
3:27876758 (GRCh37)
Canonical SPDI:: NC_000003.12:27835266:T:A
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.27835267T>A, NC_000003.11:g.27876758T>A

Select item 148124756512.

rs1481247565 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:27834934 (GRCh38)
3:27876425 (GRCh37)
Canonical SPDI:: NC_000003.12:27834933:C:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.27834934C>G, NC_000003.11:g.27876425C>G

Select item 147903506913.

rs1479035069 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 3:27832849 (GRCh38)
3:27874340 (GRCh37)
Canonical SPDI:: NC_000003.12:27832848:A:C,NC_000003.12:27832848:A:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.27832849A>C, NC_000003.12:g.27832849A>G, NC_000003.11:g.27874340A>C, NC_000003.11:g.27874340A>G, NR_132438.1:n.872T>G, NR_132438.1:n.872T>C

Select item 147827668214.

rs1478276682 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:27833256 (GRCh38)
3:27874747 (GRCh37)
Canonical SPDI:: NC_000003.12:27833255:T:C
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.27833256T>C, NC_000003.11:g.27874747T>C, NR_132438.1:n.465A>G

Select item 147806740415.

rs1478067404 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:27832023 (GRCh38)
3:27873514 (GRCh37)
Canonical SPDI:: NC_000003.12:27832022:A:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.27832023A>G, NC_000003.11:g.27873514A>G, NR_132438.1:n.1698T>C

Select item 147775758516.

rs1477757585 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:27835651 (GRCh38)
3:27877142 (GRCh37)
Canonical SPDI:: NC_000003.12:27835650:C:T
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000637/11 (TOMMO)
HGVS:: NC_000003.12:g.27835651C>T, NC_000003.11:g.27877142C>T

Select item 147677027217.

rs1476770272 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:27831119 (GRCh38)
3:27872610 (GRCh37)
Canonical SPDI:: NC_000003.12:27831118:T:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.27831119T>G, NC_000003.11:g.27872610T>G, NR_132438.1:n.2602A>C

Select item 147674003618.

rs1476740036 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:27832304 (GRCh38)
3:27873795 (GRCh37)
Canonical SPDI:: NC_000003.12:27832303:A:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.27832304A>G, NC_000003.11:g.27873795A>G, NR_132438.1:n.1417T>C

Select item 147555581319.

rs1475555813 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:27834701 (GRCh38)
3:27876192 (GRCh37)
Canonical SPDI:: NC_000003.12:27834700:C:A,NC_000003.12:27834700:C:T
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000071/1 (TOMMO)
A=0.000312/2 (1000Genomes)
A=0.001027/3 (KOREAN)
A=0.001092/2 (Korea1K)
HGVS:: NC_000003.12:g.27834701C>A, NC_000003.12:g.27834701C>T, NC_000003.11:g.27876192C>A, NC_000003.11:g.27876192C>T

Select item 147454041720.

rs1474540417 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:27832196 (GRCh38)
3:27873687 (GRCh37)
Canonical SPDI:: NC_000003.12:27832195:A:G
Gene:: LINC01981 (Varview), LINC01980 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000003.12:g.27832196A>G, NC_000003.11:g.27873687A>G, NR_132438.1:n.1525T>C

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