SNP Links for Gene (Select 100996279) - SNP

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Select item 14915466291.

rs1491546629 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: X:69204797 (GRCh38)
X:68424640 (GRCh37)
Canonical SPDI:: NC_000023.11:69204795:TTT:T
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000023.11:g.69204797_69204798del, NC_000023.10:g.68424640_68424641del

Select item 14913138492.

rs1491313849 has merged into rs1359180865 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: X:69204743 (GRCh38)
X:68424586 (GRCh37)
Canonical SPDI:: NC_000023.11:69204741:TCT:T,NC_000023.11:69204741:TCT:TCTCT
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TCTCT=0./0 (ALFA)
HGVS:: NC_000023.11:g.69204743_69204744del, NC_000023.11:g.69204743_69204744dup, NC_000023.10:g.68424586_68424587del, NC_000023.10:g.68424586_68424587dup

Select item 14910834553.

rs1491083455 has merged into rs60838142 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,AA,AAA,AAAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: X:69180539 (GRCh38)
X:68400382 (GRCh37)
Canonical SPDI:: NC_000023.11:69180528:AAAAAAAAAAAAAA:AAAAAAAAAA,NC_000023.11:69180528:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000023.11:69180528:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000023.11:69180528:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000023.11:69180528:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000023.11:69180528:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAA=0.0003/2 (ALFA)
A=0.1277/482 (1000Genomes)
HGVS:: NC_000023.11:g.69180539_69180542del, NC_000023.11:g.69180541_69180542del, NC_000023.11:g.69180542del, NC_000023.11:g.69180542dup, NC_000023.11:g.69180541_69180542dup, NC_000023.11:g.69180540_69180542dup, NC_000023.10:g.68400382_68400385del, NC_000023.10:g.68400384_68400385del, NC_000023.10:g.68400385del, NC_000023.10:g.68400385dup, NC_000023.10:g.68400384_68400385dup, NC_000023.10:g.68400383_68400385dup

Select item 14908314394.

rs1490831439 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:69208267 (GRCh38)
X:68428110 (GRCh37)
Canonical SPDI:: NC_000023.11:69208266:G:T
Gene:: LINC00269 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000023.11:g.69208267G>T, NC_000023.10:g.68428110G>T, NR_103715.1:n.516G>T, NM_173697.1:c.231G>T

Select item 14907314465.

rs1490731446 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:69188241 (GRCh38)
X:68408084 (GRCh37)
Canonical SPDI:: NC_000023.11:69188240:T:C
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.69188241T>C, NC_000023.10:g.68408084T>C

Select item 14904424746.

rs1490442474 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:69185900 (GRCh38)
X:68405743 (GRCh37)
Canonical SPDI:: NC_000023.11:69185899:A:G
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.69185900A>G, NC_000023.10:g.68405743A>G

Select item 14903891217.

rs1490389121 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:69206372 (GRCh38)
X:68426215 (GRCh37)
Canonical SPDI:: NC_000023.11:69206371:A:G
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.69206372A>G, NC_000023.10:g.68426215A>G

Select item 14903549098.

rs1490354909 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:69207979 (GRCh38)
X:68427822 (GRCh37)
Canonical SPDI:: NC_000023.11:69207978:G:C
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.69207979G>C, NC_000023.10:g.68427822G>C

Select item 14902448909.

rs1490244890 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:69186876 (GRCh38)
X:68406719 (GRCh37)
Canonical SPDI:: NC_000023.11:69186875:C:T
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000245/4 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000019/2 (GnomAD)
T=0.000416/2 (1000Genomes)
HGVS:: NC_000023.11:g.69186876C>T, NC_000023.10:g.68406719C>T

Select item 149023295610.

rs1490232956 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:69196162 (GRCh38)
X:68416005 (GRCh37)
Canonical SPDI:: NC_000023.11:69196161:G:C
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.69196162G>C, NC_000023.10:g.68416005G>C

Select item 149021808311.

rs1490218083 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:69193366 (GRCh38)
X:68413209 (GRCh37)
Canonical SPDI:: NC_000023.11:69193365:A:C
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.69193366A>C, NC_000023.10:g.68413209A>C

Select item 149013814312.

rs1490138143 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: X:69183258 (GRCh38)
X:68403101 (GRCh37)
Canonical SPDI:: NC_000023.11:69183257:C:A,NC_000023.11:69183257:C:G
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.69183258C>A, NC_000023.11:g.69183258C>G, NC_000023.10:g.68403101C>A, NC_000023.10:g.68403101C>G

Select item 148995393613.

rs1489953936 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:69185219 (GRCh38)
X:68405062 (GRCh37)
Canonical SPDI:: NC_000023.11:69185218:A:C
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.69185219A>C, NC_000023.10:g.68405062A>C

Select item 148971627114.

rs1489716271 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:69199683 (GRCh38)
X:68419526 (GRCh37)
Canonical SPDI:: NC_000023.11:69199682:G:A
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000048/5 (GnomAD)
HGVS:: NC_000023.11:g.69199683G>A, NC_000023.10:g.68419526G>A

Select item 148954962415.

rs1489549624 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:69183045 (GRCh38)
X:68402888 (GRCh37)
Canonical SPDI:: NC_000023.11:69183044:G:A
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/3 (GnomAD)
A=0.000034/9 (TOPMED)
HGVS:: NC_000023.11:g.69183045G>A, NC_000023.10:g.68402888G>A

Select item 148942881316.

rs1489428813 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:69178049 (GRCh38)
X:68397892 (GRCh37)
Canonical SPDI:: NC_000023.11:69178048:T:C
Gene:: LINC00269 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.69178049T>C, NC_000023.10:g.68397892T>C

Select item 148937691117.

rs1489376911 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: X:69198419 (GRCh38)
X:68418262 (GRCh37)
Canonical SPDI:: NC_000023.11:69198418:C:A,NC_000023.11:69198418:C:G
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.69198419C>A, NC_000023.11:g.69198419C>G, NC_000023.10:g.68418262C>A, NC_000023.10:g.68418262C>G

Select item 148936090618.

rs1489360906 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:69198629 (GRCh38)
X:68418472 (GRCh37)
Canonical SPDI:: NC_000023.11:69198628:G:A
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.69198629G>A, NC_000023.10:g.68418472G>A

Select item 148899195519.

rs1488991955 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:69188696 (GRCh38)
X:68408539 (GRCh37)
Canonical SPDI:: NC_000023.11:69188695:A:T
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.69188696A>T, NC_000023.10:g.68408539A>T

Select item 148851273420.

rs1488512734 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:69188820 (GRCh38)
X:68408663 (GRCh37)
Canonical SPDI:: NC_000023.11:69188819:C:T
Gene:: LINC00269 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.69188820C>T, NC_000023.10:g.68408663C>T

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