SNP Links for Gene (Select 100874330) - SNP

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Items: 1 to 20 of 8505

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Select item 14914951981.

rs1491495198 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CGTG [Show Flanks]
Chromosome:: 3:178457776 (GRCh38)
3:178175565 (GRCh37)
Canonical SPDI:: NC_000003.12:178457776:GTG:GTGCGTG
Gene:: LINC01014 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: GTGCGTG=0./0 (ALFA)
GTGC=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.178457779_178457780insCGTG, NC_000003.11:g.178175567_178175568insCGTG

Select item 14909830482.

rs1490983048 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTCTATT>- [Show Flanks]
Chromosome:: 3:178427007 (GRCh38)
3:178144795 (GRCh37)
Canonical SPDI:: NC_000003.12:178427004:TTTTCTATT:TT
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.178427007_178427013del, NC_000003.11:g.178144795_178144801del

Select item 14908940383.

rs1490894038 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:178438610 (GRCh38)
3:178156398 (GRCh37)
Canonical SPDI:: NC_000003.12:178438609:C:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.178438610C>T, NC_000003.11:g.178156398C>T

Select item 14906985614.

rs1490698561 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:178442169 (GRCh38)
3:178159957 (GRCh37)
Canonical SPDI:: NC_000003.12:178442168:A:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.178442169A>T, NC_000003.11:g.178159957A>T

Select item 14906282385.

rs1490628238 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:178435814 (GRCh38)
3:178153602 (GRCh37)
Canonical SPDI:: NC_000003.12:178435813:C:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.178435814C>T, NC_000003.11:g.178153602C>T

Select item 14905572536.

rs1490557253 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:178449558 (GRCh38)
3:178167346 (GRCh37)
Canonical SPDI:: NC_000003.12:178449557:C:A
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.178449558C>A, NC_000003.11:g.178167346C>A

Select item 14904765867.

rs1490476586 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:178422326 (GRCh38)
3:178140114 (GRCh37)
Canonical SPDI:: NC_000003.12:178422325:G:A
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000142/2 (TOMMO)
HGVS:: NC_000003.12:g.178422326G>A, NC_000003.11:g.178140114G>A

Select item 14901944778.

rs1490194477 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACAT>- [Show Flanks]
Chromosome:: 3:178443717 (GRCh38)
3:178161505 (GRCh37)
Canonical SPDI:: NC_000003.12:178443715:TACAT:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000003.12:g.178443717_178443720del, NC_000003.11:g.178161505_178161508del

Select item 14901551159.

rs1490155115 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:178452027 (GRCh38)
3:178169815 (GRCh37)
Canonical SPDI:: NC_000003.12:178452026:T:A
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.178452027T>A, NC_000003.11:g.178169815T>A

Select item 149013164410.

rs1490131644 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:178455034 (GRCh38)
3:178172822 (GRCh37)
Canonical SPDI:: NC_000003.12:178455033:A:G
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.00007/1 (ALFA)
HGVS:: NC_000003.12:g.178455034A>G, NC_000003.11:g.178172822A>G

Select item 149012198511.

rs1490121985 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 3:178436192 (GRCh38)
3:178153980 (GRCh37)
Canonical SPDI:: NC_000003.12:178436191:C:G,NC_000003.12:178436191:C:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
G=0.000342/1 (KOREAN)
HGVS:: NC_000003.12:g.178436192C>G, NC_000003.12:g.178436192C>T, NC_000003.11:g.178153980C>G, NC_000003.11:g.178153980C>T

Select item 149008820212.

rs1490088202 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:178435151 (GRCh38)
3:178152939 (GRCh37)
Canonical SPDI:: NC_000003.12:178435150:A:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000038/10 (TOPMED)
HGVS:: NC_000003.12:g.178435151A>T, NC_000003.11:g.178152939A>T

Select item 149004457213.

rs1490044572 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:178418351 (GRCh38)
3:178136139 (GRCh37)
Canonical SPDI:: NC_000003.12:178418350:T:C
Gene:: LINC01014 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000003.12:g.178418351T>C, NC_000003.11:g.178136139T>C

Select item 149002811114.

rs1490028111 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 3:178417855 (GRCh38)
3:178135643 (GRCh37)
Canonical SPDI:: NC_000003.12:178417854:C:A,NC_000003.12:178417854:C:G,NC_000003.12:178417854:C:T
Gene:: LINC01014 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.178417855C>A, NC_000003.12:g.178417855C>G, NC_000003.12:g.178417855C>T, NC_000003.11:g.178135643C>A, NC_000003.11:g.178135643C>G, NC_000003.11:g.178135643C>T

Select item 149002177215.

rs1490021772 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:178453689 (GRCh38)
3:178171477 (GRCh37)
Canonical SPDI:: NC_000003.12:178453688:C:A
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.178453689C>A, NC_000003.11:g.178171477C>A

Select item 148998751816.

rs1489987518 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:178421248 (GRCh38)
3:178139036 (GRCh37)
Canonical SPDI:: NC_000003.12:178421247:C:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.178421248C>T, NC_000003.11:g.178139036C>T

Select item 148998387417.

rs1489983874 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:178427927 (GRCh38)
3:178145715 (GRCh37)
Canonical SPDI:: NC_000003.12:178427926:C:T
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.178427927C>T, NC_000003.11:g.178145715C>T

Select item 148986541318.

rs1489865413 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:178418989 (GRCh38)
3:178136777 (GRCh37)
Canonical SPDI:: NC_000003.12:178418988:C:A
Gene:: LINC01014 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000003.12:g.178418989C>A, NC_000003.11:g.178136777C>A

Select item 148961766019.

rs1489617660 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:178444178 (GRCh38)
3:178161966 (GRCh37)
Canonical SPDI:: NC_000003.12:178444177:T:C
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.178444178T>C, NC_000003.11:g.178161966T>C

Select item 148955767220.

rs1489557672 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTA>- [Show Flanks]
Chromosome:: 3:178439313 (GRCh38)
3:178157101 (GRCh37)
Canonical SPDI:: NC_000003.12:178439311:ATTA:A
Gene:: LINC01014 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000003.12:g.178439313_178439315del, NC_000003.11:g.178157101_178157103del

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