SNP Links for Gene (Select 100874164) - SNP

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Select item 14893768551.

rs1489376855 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 13:18739567 (GRCh38)
13:19313708 (GRCh37)
Canonical SPDI:: NC_000013.11:18739567:T:TT
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0.00184/34 (ALFA)
HGVS:: NC_000013.11:g.18739568dup, NT_187594.1:g.41218dup, NC_000013.10:g.19313708dup

Select item 14893389762.

rs1489338976 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:18738297 (GRCh38)
13:19312437 (GRCh37)
Canonical SPDI:: NC_000013.11:18738296:A:G
Gene:: LINC00417 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.4747/2122 (ALFA)
G=0.4644/1357 (KOREAN)
HGVS:: NC_000013.11:g.18738297A>G, NT_187594.1:g.39947A>G, NC_000013.10:g.19312437A>G, NR_047508.1:n.345T>C

Select item 14892280593.

rs1489228059 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:18738009 (GRCh38)
13:19312149 (GRCh37)
Canonical SPDI:: NC_000013.11:18738008:G:A
Gene:: LINC00417 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000057/8 (GnomAD)
HGVS:: NC_000013.11:g.18738009G>A, NT_187594.1:g.39659G>A, NC_000013.10:g.19312149G>A

Select item 14890744904.

rs1489074490 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:18739220 (GRCh38)
13:19313360 (GRCh37)
Canonical SPDI:: NC_000013.11:18739219:G:A
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.18739220G>A, NT_187594.1:g.40870G>A, NC_000013.10:g.19313360G>A

Select item 14890398105.

rs1489039810 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:18738998 (GRCh38)
13:19313138 (GRCh37)
Canonical SPDI:: NC_000013.11:18738997:A:T
Gene:: LINC00417 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.18738998A>T, NT_187594.1:g.40648A>T, NC_000013.10:g.19313138A>T, NR_047508.1:n.233T>A

Select item 14890141416.

rs1489014141 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:18738556 (GRCh38)
13:19312696 (GRCh37)
Canonical SPDI:: NC_000013.11:18738555:C:T
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.18738556C>T, NT_187594.1:g.40206C>T, NC_000013.10:g.19312696C>T

Select item 14877802307.

rs1487780230 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:18739818 (GRCh38)
13:19313958 (GRCh37)
Canonical SPDI:: NC_000013.11:18739817:C:T
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.087/389 (ALFA)
HGVS:: NC_000013.11:g.18739818C>T, NT_187594.1:g.41468C>T, NC_000013.10:g.19313958C>T

Select item 14877041878.

rs1487704187 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:18738677 (GRCh38)
13:19312817 (GRCh37)
Canonical SPDI:: NC_000013.11:18738676:A:C
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.0038/11 (KOREAN)
HGVS:: NC_000013.11:g.18738677A>C, NT_187594.1:g.40327A>C, NC_000013.10:g.19312817A>C

Select item 14871511419.

rs1487151141 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:18741894 (GRCh38)
13:19316034 (GRCh37)
Canonical SPDI:: NC_000013.11:18741893:C:T
Gene:: LINC00417 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0031/14 (ALFA)
T=0.0541/158 (KOREAN)
HGVS:: NC_000013.11:g.18741894C>T, NG_024825.1:g.908G>A, NT_187594.1:g.43544C>T, NC_000013.10:g.19316034C>T

Select item 148699614810.

rs1486996148 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 13:18738630 (GRCh38)
13:19312770 (GRCh37)
Canonical SPDI:: NC_000013.11:18738629:G:C,NC_000013.11:18738629:G:T
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.18738630G>C, NC_000013.11:g.18738630G>T, NT_187594.1:g.40280G>C, NT_187594.1:g.40280G>T, NC_000013.10:g.19312770G>C, NC_000013.10:g.19312770G>T

Select item 148673601011.

rs1486736010 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:18741245 (GRCh38)
13:19315385 (GRCh37)
Canonical SPDI:: NC_000013.11:18741244:C:T
Gene:: LINC00417 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000013.11:g.18741245C>T, NT_187594.1:g.42895C>T, NC_000013.10:g.19315385C>T

Select item 148614212812.

rs1486142128 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:18740411 (GRCh38)
13:19314551 (GRCh37)
Canonical SPDI:: NC_000013.11:18740410:G:C
Gene:: LINC00417 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.0022/10 (ALFA)
HGVS:: NC_000013.11:g.18740411G>C, NT_187594.1:g.42061G>C, NC_000013.10:g.19314551G>C

Select item 148601048013.

rs1486010480 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:18739261 (GRCh38)
13:19313401 (GRCh37)
Canonical SPDI:: NC_000013.11:18739260:G:A
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0199/89 (ALFA)
A=0.064/187 (KOREAN)
HGVS:: NC_000013.11:g.18739261G>A, NT_187594.1:g.40911G>A, NC_000013.10:g.19313401G>A

Select item 148596417414.

rs1485964174 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:18738813 (GRCh38)
13:19312953 (GRCh37)
Canonical SPDI:: NC_000013.11:18738812:G:A
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000029/4 (GnomAD)
HGVS:: NC_000013.11:g.18738813G>A, NT_187594.1:g.40463G>A, NC_000013.10:g.19312953G>A

Select item 148578167015.

rs1485781670 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:18739680 (GRCh38)
13:19313820 (GRCh37)
Canonical SPDI:: NC_000013.11:18739679:C:T
Gene:: LINC00417 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000013.11:g.18739680C>T, NT_187594.1:g.41330C>T, NC_000013.10:g.19313820C>T

Select item 148572876016.

rs1485728760 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 13:18740551 (GRCh38)
13:19314691 (GRCh37)
Canonical SPDI:: NC_000013.11:18740550:C:A,NC_000013.11:18740550:C:T
Gene:: LINC00417 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
T=0.015743/46 (KOREAN)
HGVS:: NC_000013.11:g.18740551C>A, NC_000013.11:g.18740551C>T, NT_187594.1:g.42201C>A, NT_187594.1:g.42201C>T, NC_000013.10:g.19314691C>A, NC_000013.10:g.19314691C>T

Select item 148493332517.

rs1484933325 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 13:18740466 (GRCh38)
13:19314606 (GRCh37)
Canonical SPDI:: NC_000013.11:18740465:A:G,NC_000013.11:18740465:A:T
Gene:: LINC00417 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.18740466A>G, NC_000013.11:g.18740466A>T, NT_187594.1:g.42116A>G, NT_187594.1:g.42116A>T, NC_000013.10:g.19314606A>G, NC_000013.10:g.19314606A>T

Select item 148450616618.

rs1484506166 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:18740962 (GRCh38)
13:19315102 (GRCh37)
Canonical SPDI:: NC_000013.11:18740961:G:A
Gene:: LINC00417 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.005778/107 (ALFA)
A=0.000011/3 (TOPMED)
A=0.075975/222 (KOREAN)
HGVS:: NC_000013.11:g.18740962G>A, NT_187594.1:g.42612G>A, NC_000013.10:g.19315102G>A

Select item 148361938019.

rs1483619380 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148293321020.

rs1482933210 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 13:18740225 (GRCh38)
13:19314365 (GRCh37)
Canonical SPDI:: NC_000013.11:18740224:A:
Gene:: LINC00417 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000013.11:g.18740225del, NT_187594.1:g.41875del, NC_000013.10:g.19314365del

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