SNP Links for Gene (Select 100861522) - SNP

Links from Gene

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Select item 14903128981.

rs1490312898 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:37621848 (GRCh38)
20:36250250 (GRCh37)
Canonical SPDI:: NC_000020.11:37621847:C:G
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.37621848C>G, NC_000020.10:g.36250250C>G

Select item 14902815542.

rs1490281554 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:37621280 (GRCh38)
20:36249682 (GRCh37)
Canonical SPDI:: NC_000020.11:37621279:T:C
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.37621280T>C, NC_000020.10:g.36249682T>C

Select item 14898261433.

rs1489826143 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 20:37622263 (GRCh38)
20:36250665 (GRCh37)
Canonical SPDI:: NC_000020.11:37622262:A:T
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.37622263A>T, NC_000020.10:g.36250665A>T

Select item 14888775054.

rs1488877505 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:37622676 (GRCh38)
20:36251078 (GRCh37)
Canonical SPDI:: NC_000020.11:37622675:C:T
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000020.11:g.37622676C>T, NC_000020.10:g.36251078C>T

Select item 14882026405.

rs1488202640 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 20:37619094 (GRCh38)
20:36247497 (GRCh37)
Canonical SPDI:: NC_000020.11:37619094:A:AA
Gene:: LINC00489 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000020.11:g.37619095dup, NC_000020.10:g.36247497dup

Select item 14869486976.

rs1486948697 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>- [Show Flanks]
Chromosome:: 20:37624662 (GRCh38)
20:36253064 (GRCh37)
Canonical SPDI:: NC_000020.11:37624659:TGTG:TG
Gene:: LINC00489 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TGTG=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.37624660TG[1], NC_000020.10:g.36253062TG[1]

Select item 14869184457.

rs1486918445 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:37623486 (GRCh38)
20:36251888 (GRCh37)
Canonical SPDI:: NC_000020.11:37623485:T:C
Gene:: LINC00489 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.37623486T>C, NC_000020.10:g.36251888T>C

Select item 14863908618.

rs1486390861 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:37621826 (GRCh38)
20:36250228 (GRCh37)
Canonical SPDI:: NC_000020.11:37621825:T:C
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.37621826T>C, NC_000020.10:g.36250228T>C

Select item 14860313229.

rs1486031322 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:37619690 (GRCh38)
20:36248092 (GRCh37)
Canonical SPDI:: NC_000020.11:37619689:G:A
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.37619690G>A, NC_000020.10:g.36248092G>A

Select item 148596445710.

rs1485964457 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:37625038 (GRCh38)
20:36253440 (GRCh37)
Canonical SPDI:: NC_000020.11:37625037:C:T
Gene:: LINC00489 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.37625038C>T, NC_000020.10:g.36253440C>T

Select item 148491843211.

rs1484918432 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 20:37623799 (GRCh38)
20:36252201 (GRCh37)
Canonical SPDI:: NC_000020.11:37623798:T:A
Gene:: LINC00489 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.37623799T>A, NC_000020.10:g.36252201T>A

Select item 148477291512.

rs1484772915 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:37618980 (GRCh38)
20:36247382 (GRCh37)
Canonical SPDI:: NC_000020.11:37618979:C:A
Gene:: LINC00489 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.37618980C>A, NC_000020.10:g.36247382C>A

Select item 148426271413.

rs1484262714 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TCTTCCCTCCCTCTCTTTCT [Show Flanks]
Chromosome:: 20:37622128 (GRCh38)
20:36250531 (GRCh37)
Canonical SPDI:: NC_000020.11:37622128:CTTCTTCCCTCCCTCTCTTTCT:CTTCTTCCCTCCCTCTCTTTCTTCTTCCCTCCCTCTCTTTCT
Gene:: LINC00489 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: CTTCTTCCCTCCCTCTCTTT=0.000008/1 (GnomAD)
HGVS:: NC_000020.11:g.37622131_37622150dup, NC_000020.10:g.36250533_36250552dup, NR_047461.1:n.344_363dup

Select item 148348470114.

rs1483484701 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:37622933 (GRCh38)
20:36251335 (GRCh37)
Canonical SPDI:: NC_000020.11:37622932:G:T
Gene:: LINC00489 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.37622933G>T, NC_000020.10:g.36251335G>T, NR_047461.1:n.187C>A

Select item 148231959815.

rs1482319598 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:37621295 (GRCh38)
20:36249697 (GRCh37)
Canonical SPDI:: NC_000020.11:37621294:G:A
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.37621295G>A, NC_000020.10:g.36249697G>A

Select item 148182984316.

rs1481829843 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:37621476 (GRCh38)
20:36249878 (GRCh37)
Canonical SPDI:: NC_000020.11:37621475:T:C
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000020.11:g.37621476T>C, NC_000020.10:g.36249878T>C

Select item 148056488417.

rs1480564884 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:37624520 (GRCh38)
20:36252922 (GRCh37)
Canonical SPDI:: NC_000020.11:37624519:C:T
Gene:: LINC00489 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.37624520C>T, NC_000020.10:g.36252922C>T

Select item 148033003318.

rs1480330033 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:37621935 (GRCh38)
20:36250337 (GRCh37)
Canonical SPDI:: NC_000020.11:37621934:G:A
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.37621935G>A, NC_000020.10:g.36250337G>A

Select item 147935893519.

rs1479358935 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:37622339 (GRCh38)
20:36250741 (GRCh37)
Canonical SPDI:: NC_000020.11:37622338:G:A
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000020.11:g.37622339G>A, NC_000020.10:g.36250741G>A

Select item 147872809820.

rs1478728098 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:37619824 (GRCh38)
20:36248226 (GRCh37)
Canonical SPDI:: NC_000020.11:37619823:C:T
Gene:: LINC00489 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.37619824C>T, NC_000020.10:g.36248226C>T

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