SNP Links for Gene (Select 100652736) - SNP

Links from Gene

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Select item 14908079601.

rs1490807960 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:19171710 (GRCh38)
22:19159223 (GRCh37)
Canonical SPDI:: NC_000022.11:19171709:C:A,NC_000022.11:19171709:C:T
Gene:: LINC01311 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000022.11:g.19171710C>A, NC_000022.11:g.19171710C>T, NW_003871096.1:g.24927C>A, NW_003871096.1:g.24927C>T, NC_000022.10:g.19159223C>A, NC_000022.10:g.19159223C>T, NR_103767.1:n.5C>A, NR_103767.1:n.5C>T

Select item 14906176892.

rs1490617689 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:19173143 (GRCh38)
22:19160656 (GRCh37)
Canonical SPDI:: NC_000022.11:19173142:C:T
Gene:: LINC01311 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000022.11:g.19173143C>T, NW_003871096.1:g.26360C>T, NC_000022.10:g.19160656C>T

Select item 14903181953.

rs1490318195 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:19171417 (GRCh38)
22:19158930 (GRCh37)
Canonical SPDI:: NC_000022.11:19171416:T:C
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.19171417T>C, NW_003871096.1:g.24634T>C, NC_000022.10:g.19158930T>C

Select item 14902915474.

rs1490291547 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:19172146 (GRCh38)
22:19159659 (GRCh37)
Canonical SPDI:: NC_000022.11:19172145:C:G
Gene:: LINC01311 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.19172146C>G, NW_003871096.1:g.25363C>G, NC_000022.10:g.19159659C>G, NR_103767.1:n.441C>G

Select item 14888821875.

rs1488882187 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:19171412 (GRCh38)
22:19158925 (GRCh37)
Canonical SPDI:: NC_000022.11:19171411:C:A
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000022.11:g.19171412C>A, NW_003871096.1:g.24629C>A, NC_000022.10:g.19158925C>A

Select item 14883545996.

rs1488354599 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:19173249 (GRCh38)
22:19160762 (GRCh37)
Canonical SPDI:: NC_000022.11:19173248:G:C
Gene:: LINC01311 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000022.11:g.19173249G>C, NW_003871096.1:g.26466G>C, NC_000022.10:g.19160762G>C

Select item 14882345427.

rs1488234542 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:19170340 (GRCh38)
22:19157853 (GRCh37)
Canonical SPDI:: NC_000022.11:19170339:T:C
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000022.11:g.19170340T>C, NW_003871096.1:g.23557T>C, NC_000022.10:g.19157853T>C

Select item 14878994418.

rs1487899441 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 22:19169879 (GRCh38)
22:19157392 (GRCh37)
Canonical SPDI:: NC_000022.11:19169878:A:C
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000049/13 (TOPMED)
HGVS:: NC_000022.11:g.19169879A>C, NW_003871096.1:g.23096A>C, NC_000022.10:g.19157392A>C

Select item 14850787169.

rs1485078716 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 22:19172257 (GRCh38)
22:19159770 (GRCh37)
Canonical SPDI:: NC_000022.11:19172256:T:A
Gene:: LINC01311 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.19172257T>A, NW_003871096.1:g.25474T>A, NC_000022.10:g.19159770T>A, NR_103767.1:n.552T>A

Select item 148264270310.

rs1482642703 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 22:19172421 (GRCh38)
22:19159934 (GRCh37)
Canonical SPDI:: NC_000022.11:19172420:GG:G
Gene:: LINC01311 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.19172422del, NW_003871096.1:g.25639del, NC_000022.10:g.19159935del, NR_103767.1:n.717del

Select item 148078843111.

rs1480788431 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:19172138 (GRCh38)
22:19159651 (GRCh37)
Canonical SPDI:: NC_000022.11:19172137:G:A,NC_000022.11:19172137:G:T
Gene:: LINC01311 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.19172138G>A, NC_000022.11:g.19172138G>T, NW_003871096.1:g.25355G>A, NW_003871096.1:g.25355G>T, NC_000022.10:g.19159651G>A, NC_000022.10:g.19159651G>T, NR_103767.1:n.433G>A, NR_103767.1:n.433G>T

Select item 148037097412.

rs1480370974 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:19172228 (GRCh38)
22:19159741 (GRCh37)
Canonical SPDI:: NC_000022.11:19172227:G:C
Gene:: LINC01311 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.19172228G>C, NW_003871096.1:g.25445G>C, NC_000022.10:g.19159741G>C, NR_103767.1:n.523G>C

Select item 148013736213.

rs1480137362 has merged into rs76500193 [Homo sapiens]

Variant type:: DELINS
Alleles:: AATC>- [Show Flanks]
Chromosome:: 22:19171530 (GRCh38)
22:19159043 (GRCh37)
Canonical SPDI:: NC_000022.11:19171524:CAATCAATC:CAATC
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CAATC=0.000071/1 (ALFA)
-=0.000057/8 (GnomAD)
-=0.000076/20 (TOPMED)
HGVS:: NC_000022.11:g.19171526AATC[1], NW_003871096.1:g.24743AATC[1], NC_000022.10:g.19159039AATC[1]

Select item 147935361914.

rs1479353619 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:19171643 (GRCh38)
22:19159156 (GRCh37)
Canonical SPDI:: NC_000022.11:19171642:C:T
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.19171643C>T, NW_003871096.1:g.24860C>T, NC_000022.10:g.19159156C>T

Select item 147881250415.

rs1478812504 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:19169832 (GRCh38)
22:19157345 (GRCh37)
Canonical SPDI:: NC_000022.11:19169831:G:A,NC_000022.11:19169831:G:C
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.19169832G>A, NC_000022.11:g.19169832G>C, NW_003871096.1:g.23049G>A, NW_003871096.1:g.23049G>C, NC_000022.10:g.19157345G>A, NC_000022.10:g.19157345G>C

Select item 147877056016.

rs1478770560 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTAG>- [Show Flanks]
Chromosome:: 22:19171059 (GRCh38)
22:19158572 (GRCh37)
Canonical SPDI:: NC_000022.11:19171056:AGTTAG:AG
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.19171059_19171062del, NW_003871096.1:g.24276_24279del, NC_000022.10:g.19158572_19158575del

Select item 147791526217.

rs1477915262 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:19169962 (GRCh38)
22:19157475 (GRCh37)
Canonical SPDI:: NC_000022.11:19169961:C:G,NC_000022.11:19169961:C:T
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.19169962C>G, NC_000022.11:g.19169962C>T, NW_003871096.1:g.23179C>G, NW_003871096.1:g.23179C>T, NC_000022.10:g.19157475C>G, NC_000022.10:g.19157475C>T

Select item 147784966118.

rs1477849661 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:19171077 (GRCh38)
22:19158590 (GRCh37)
Canonical SPDI:: NC_000022.11:19171076:G:A
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.00005/7 (GnomAD)
A=0.00006/16 (TOPMED)
HGVS:: NC_000022.11:g.19171077G>A, NW_003871096.1:g.24294G>A, NC_000022.10:g.19158590G>A

Select item 147746381219.

rs1477463812 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 22:19169973 (GRCh38)
22:19157486 (GRCh37)
Canonical SPDI:: NC_000022.11:19169972:C:A,NC_000022.11:19169972:C:G,NC_000022.11:19169972:C:T
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.19169973C>A, NC_000022.11:g.19169973C>G, NC_000022.11:g.19169973C>T, NW_003871096.1:g.23190C>A, NW_003871096.1:g.23190C>G, NW_003871096.1:g.23190C>T, NC_000022.10:g.19157486C>A, NC_000022.10:g.19157486C>G, NC_000022.10:g.19157486C>T

Select item 147724952120.

rs1477249521 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:19170095 (GRCh38)
22:19157608 (GRCh37)
Canonical SPDI:: NC_000022.11:19170094:A:G
Gene:: LINC01311 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.19170095A>G, NW_003871096.1:g.23312A>G, NC_000022.10:g.19157608A>G

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