SNP Links for Gene (Select 100616392) - SNP

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Links from Gene

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Select item 14903151811.

rs1490315181 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:151367277 (GRCh38)
2:152223791 (GRCh37)
Canonical SPDI:: NC_000002.12:151367276:C:T
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.151367277C>T, NC_000002.11:g.152223791C>T

Select item 14891640332.

rs1489164033 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:151367201 (GRCh38)
2:152223715 (GRCh37)
Canonical SPDI:: NC_000002.12:151367200:T:C
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151367201T>C, NC_000002.11:g.152223715T>C

Select item 14885185693.

rs1488518569 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:151366611 (GRCh38)
2:152223125 (GRCh37)
Canonical SPDI:: NC_000002.12:151366610:G:A,NC_000002.12:151366610:G:C,NC_000002.12:151366610:G:T
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000002.12:g.151366611G>A, NC_000002.12:g.151366611G>C, NC_000002.12:g.151366611G>T, NC_000002.11:g.152223125G>A, NC_000002.11:g.152223125G>C, NC_000002.11:g.152223125G>T

Select item 14874982374.

rs1487498237 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:151367694 (GRCh38)
2:152224208 (GRCh37)
Canonical SPDI:: NC_000002.12:151367693:G:A
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.151367694G>A, NC_000002.11:g.152224208G>A

Select item 14874355605.

rs1487435560 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:151368539 (GRCh38)
2:152225053 (GRCh37)
Canonical SPDI:: NC_000002.12:151368538:A:G
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151368539A>G, NC_000002.11:g.152225053A>G

Select item 14855129396.

rs1485512939 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:151368275 (GRCh38)
2:152224789 (GRCh37)
Canonical SPDI:: NC_000002.12:151368274:A:C
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.151368275A>C, NC_000002.11:g.152224789A>C

Select item 14853366347.

rs1485336634 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:151367923 (GRCh38)
2:152224437 (GRCh37)
Canonical SPDI:: NC_000002.12:151367922:T:C
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151367923T>C, NC_000002.11:g.152224437T>C

Select item 14832233688.

rs1483223368 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:151368384 (GRCh38)
2:152224898 (GRCh37)
Canonical SPDI:: NC_000002.12:151368383:A:G
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151368384A>G, NC_000002.11:g.152224898A>G, NR_039932.1:n.28T>C, NR_039931.1:n.51A>G

Select item 14786338769.

rs1478633876 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:151368726 (GRCh38)
2:152225240 (GRCh37)
Canonical SPDI:: NC_000002.12:151368725:C:T
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151368726C>T, NC_000002.11:g.152225240C>T

Select item 147521474910.

rs1475214749 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 2:151368355 (GRCh38)
2:152224869 (GRCh37)
Canonical SPDI:: NC_000002.12:151368354:T:C,NC_000002.12:151368354:T:G
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.151368355T>C, NC_000002.12:g.151368355T>G, NC_000002.11:g.152224869T>C, NC_000002.11:g.152224869T>G, NR_039932.1:n.57A>G, NR_039932.1:n.57A>C, NR_039931.1:n.22T>C, NR_039931.1:n.22T>G

Select item 147503266211.

rs1475032662 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:151366901 (GRCh38)
2:152223415 (GRCh37)
Canonical SPDI:: NC_000002.12:151366900:T:A
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.151366901T>A, NC_000002.11:g.152223415T>A

Select item 147293841612.

rs1472938416 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:151367199 (GRCh38)
2:152223713 (GRCh37)
Canonical SPDI:: NC_000002.12:151367198:T:G
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
G=0.000342/1 (KOREAN)
G=0.002619/44 (TOMMO)
HGVS:: NC_000002.12:g.151367199T>G, NC_000002.11:g.152223713T>G

Select item 147094073613.

rs1470940736 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:151367102 (GRCh38)
2:152223616 (GRCh37)
Canonical SPDI:: NC_000002.12:151367101:G:A
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151367102G>A, NC_000002.11:g.152223616G>A

Select item 147003155514.

rs1470031555 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 2:151368530 (GRCh38)
2:152225044 (GRCh37)
Canonical SPDI:: NC_000002.12:151368527:TTTT:TT
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTTT=0./0 (ALFA)
-=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.151368530_151368531del, NC_000002.11:g.152225044_152225045del

Select item 146737994115.

rs1467379941 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:151366888 (GRCh38)
2:152223402 (GRCh37)
Canonical SPDI:: NC_000002.12:151366887:C:T
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.151366888C>T, NC_000002.11:g.152223402C>T

Select item 146719746916.

rs1467197469 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 2:151366493 (GRCh38)
2:152223007 (GRCh37)
Canonical SPDI:: NC_000002.12:151366492:CCCC:CCC
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151366496del, NC_000002.11:g.152223010del

Select item 146695558717.

rs1466955587 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:151366570 (GRCh38)
2:152223084 (GRCh37)
Canonical SPDI:: NC_000002.12:151366569:G:C
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151366570G>C, NC_000002.11:g.152223084G>C

Select item 146687838018.

rs1466878380 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:151368070 (GRCh38)
2:152224584 (GRCh37)
Canonical SPDI:: NC_000002.12:151368069:G:A
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.151368070G>A, NC_000002.11:g.152224584G>A

Select item 146427903719.

rs1464279037 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:151368073 (GRCh38)
2:152224587 (GRCh37)
Canonical SPDI:: NC_000002.12:151368072:A:G
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), MIR4773-2 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151368073A>G, NC_000002.11:g.152224587A>G

Select item 146421128020.

rs1464211280 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:151366945 (GRCh38)
2:152223459 (GRCh37)
Canonical SPDI:: NC_000002.12:151366944:G:C
Gene:: TNFAIP6 (Varview), MIR4773-1 (Varview), LOC101929319 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.151366945G>C, NC_000002.11:g.152223459G>C

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