SNP Links for Gene (Select 100507437) - SNP

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Select item 14904895191.

rs1490489519 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 14:105420661 (GRCh38)
14:105886998 (GRCh37)
Canonical SPDI:: NC_000014.9:105420660:C:G,NC_000014.9:105420660:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.105420661C>G, NC_000014.9:g.105420661C>T, NC_000014.8:g.105886998C>G, NC_000014.8:g.105886998C>T, NG_029515.1:g.5813C>G, NG_029515.1:g.5813C>T, NW_004166863.1:g.83828C>G, NW_004166863.1:g.83828C>T

Select item 14904182032.

rs1490418203 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:105420102 (GRCh38)
14:105886439 (GRCh37)
Canonical SPDI:: NC_000014.9:105420101:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.105420102C>T, NC_000014.8:g.105886439C>T, NG_029515.1:g.5254C>T, NW_004166863.1:g.83269C>T

Select item 14903249423.

rs1490324942 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 14:105421087 (GRCh38)
14:105887424 (GRCh37)
Canonical SPDI:: NC_000014.9:105421086:C:G,NC_000014.9:105421086:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000014/2 (GnomAD)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000014.9:g.105421087C>G, NC_000014.9:g.105421087C>T, NC_000014.8:g.105887424C>G, NC_000014.8:g.105887424C>T, NG_029515.1:g.6239C>G, NG_029515.1:g.6239C>T, NW_004166863.1:g.84254C>G, NW_004166863.1:g.84254C>T

Select item 14902531714.

rs1490253171 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 14:105420358 (GRCh38)
14:105886695 (GRCh37)
Canonical SPDI:: NC_000014.9:105420357:A:C
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.105420358A>C, NC_000014.8:g.105886695A>C, NG_029515.1:g.5510A>C, NW_004166863.1:g.83525A>C

Select item 14893853355.

rs1489385335 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 14:105418079 (GRCh38)
14:105884416 (GRCh37)
Canonical SPDI:: NC_000014.9:105418078:C:G,NC_000014.9:105418078:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.105418079C>G, NC_000014.9:g.105418079C>T, NC_000014.8:g.105884416C>G, NC_000014.8:g.105884416C>T, NG_029515.1:g.3231C>G, NG_029515.1:g.3231C>T, NW_004166863.1:g.81246C>G, NW_004166863.1:g.81246C>T, NR_125384.1:n.1084G>C, NR_125384.1:n.1084G>A, NR_125385.1:n.949G>C, NR_125385.1:n.949G>A

Select item 14877744226.

rs1487774422 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 14:105419677 (GRCh38)
14:105886014 (GRCh37)
Canonical SPDI:: NC_000014.9:105419676:C:A,NC_000014.9:105419676:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
HGVS:: NC_000014.9:g.105419677C>A, NC_000014.9:g.105419677C>T, NC_000014.8:g.105886014C>A, NC_000014.8:g.105886014C>T, NG_029515.1:g.4829C>A, NG_029515.1:g.4829C>T, NW_004166863.1:g.82844C>A, NW_004166863.1:g.82844C>T, NR_125384.1:n.63G>T, NR_125384.1:n.63G>A, NR_125385.1:n.63G>T, NR_125385.1:n.63G>A

Select item 14877243277.

rs1487724327 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCGCCCTGCA [Show Flanks]
Chromosome:: 14:105418531 (GRCh38)
14:105884869 (GRCh37)
Canonical SPDI:: NC_000014.9:105418531:GCACCGCCCTGCA:GCACCGCCCTGCACCGCCCTGCA
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GCACCGCCCTGCACCGCCCTGCA=0./0 (ALFA)
GCACCGCCCT=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.105418535_105418544dup, NC_000014.8:g.105884872_105884881dup, NG_029515.1:g.3687_3696dup, NW_004166863.1:g.81702_81711dup

Select item 14874475348.

rs1487447534 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGGCGG [Show Flanks]
Chromosome:: 14:105419884 (GRCh38)
14:105886222 (GRCh37)
Canonical SPDI:: NC_000014.9:105419884:GGCGG:GGCGGGGGCGG
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGCGGGGGCGG=0./0 (ALFA)
GGCGGG=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.105419889_105419890insGGGCGG, NC_000014.8:g.105886226_105886227insGGGCGG, NG_029515.1:g.5041_5042insGGGCGG, NM_004689.4:c.-147_-146insGGGCGG, NM_004689.3:c.-147_-146insGGGCGG, NM_001203258.2:c.-147_-146insGGGCGG, NM_001203258.1:c.-147_-146insGGGCGG, NW_004166863.1:g.83056_83057insGGGCGG, XM_047431904.1:c.-147_-146insGGGCGG, XM_047431905.1:c.-147_-146insGGGCGG, NM_001411061.1:c.-147_-146insGGGCGG, XM_047431906.1:c.-147_-146insGGGCGG, XM_047431907.1:c.-147_-146insGGGCGG, NM_001411062.1:c.-147_-146insGGGCGG, XM_047431908.1:c.-147_-146insGGGCGG

Select item 14873960119.

rs1487396011 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:105419025 (GRCh38)
14:105885362 (GRCh37)
Canonical SPDI:: NC_000014.9:105419024:A:G
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.105419025A>G, NC_000014.8:g.105885362A>G, NG_029515.1:g.4177A>G, NW_004166863.1:g.82192A>G, NR_125384.1:n.715T>C, NR_125385.1:n.715T>C

Select item 148708498210.

rs1487084982 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:105419920 (GRCh38)
14:105886257 (GRCh37)
Canonical SPDI:: NC_000014.9:105419919:G:A
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.105419920G>A, NC_000014.8:g.105886257G>A, NG_029515.1:g.5072G>A, NM_004689.4:c.-116G>A, NM_004689.3:c.-116G>A, NM_001203258.2:c.-116G>A, NM_001203258.1:c.-116G>A, NW_004166863.1:g.83087G>A, XM_047431904.1:c.-116G>A, XM_047431905.1:c.-116G>A, NM_001411061.1:c.-116G>A, XM_047431906.1:c.-116G>A, XM_047431907.1:c.-116G>A, NM_001411062.1:c.-116G>A, XM_047431908.1:c.-116G>A

Select item 148686124211.

rs1486861242 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGGATGGA>-,GTGGATGGAGTGGATGGA [Show Flanks]
Chromosome:: 14:105417386 (GRCh38)
14:105883723 (GRCh37)
Canonical SPDI:: NC_000014.9:105417375:AGTGGATGGAGTGGATGGA:AGTGGATGGA,NC_000014.9:105417375:AGTGGATGGAGTGGATGGA:AGTGGATGGAGTGGATGGAGTGGATGGA
Gene:: MTA1-DT (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGTGGATGGAGTGGATGGAGTGGATGGA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.105417377GTGGATGGA[1], NC_000014.9:g.105417377GTGGATGGA[3], NC_000014.8:g.105883714GTGGATGGA[1], NC_000014.8:g.105883714GTGGATGGA[3], NG_029515.1:g.2529GTGGATGGA[1], NG_029515.1:g.2529GTGGATGGA[3], NW_004166863.1:g.80544GTGGATGGA[1], NW_004166863.1:g.80544GTGGATGGA[3]

Select item 148611002112.

rs1486110021 [Homo sapiens]

Variant type:: DEL
Alleles:: GTGGATGGATT>- [Show Flanks]
Chromosome:: 14:105417386 (GRCh38)
14:105883723 (GRCh37)
Canonical SPDI:: NC_000014.9:105417385:GTGGATGGATT:
Gene:: MTA1-DT (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000014.9:g.105417386_105417396del, NC_000014.8:g.105883723_105883733del, NG_029515.1:g.2538_2548del, NW_004166863.1:g.80553_80563del

Select item 148551268613.

rs1485512686 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 14:105420789 (GRCh38)
14:105887126 (GRCh37)
Canonical SPDI:: NC_000014.9:105420788:G:A,NC_000014.9:105420788:G:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
A=0.000035/1 (TOMMO)
A=0.000546/1 (Korea1K)
A=0.002391/7 (KOREAN)
HGVS:: NC_000014.9:g.105420789G>A, NC_000014.9:g.105420789G>T, NC_000014.8:g.105887126G>A, NC_000014.8:g.105887126G>T, NG_029515.1:g.5941G>A, NG_029515.1:g.5941G>T, NW_004166863.1:g.83956G>A, NW_004166863.1:g.83956G>T

Select item 148483893014.

rs1484838930 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 14:105417304 (GRCh38)
14:105883641 (GRCh37)
Canonical SPDI:: NC_000014.9:105417303:G:C
Gene:: MTA1-DT (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.105417304G>C, NC_000014.8:g.105883641G>C, NG_029515.1:g.2456G>C, NW_004166863.1:g.80471G>C

Select item 148398682515.

rs1483986825 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:105421501 (GRCh38)
14:105887838 (GRCh37)
Canonical SPDI:: NC_000014.9:105421500:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000014.9:g.105421501C>T, NC_000014.8:g.105887838C>T, NG_029515.1:g.6653C>T, NW_004166863.1:g.84668C>T

Select item 148384431816.

rs1483844318 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:105420651 (GRCh38)
14:105886988 (GRCh37)
Canonical SPDI:: NC_000014.9:105420650:T:C
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000014.9:g.105420651T>C, NC_000014.8:g.105886988T>C, NG_029515.1:g.5803T>C, NW_004166863.1:g.83818T>C

Select item 148381609517.

rs1483816095 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:105419270 (GRCh38)
14:105885607 (GRCh37)
Canonical SPDI:: NC_000014.9:105419269:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000128/34 (TOPMED)
T=0.000135/19 (GnomAD)
HGVS:: NC_000014.9:g.105419270C>T, NC_000014.8:g.105885607C>T, NG_029515.1:g.4422C>T, NW_004166863.1:g.82437C>T, NR_125384.1:n.470G>A, NR_125385.1:n.470G>A

Select item 148376043818.

rs1483760438 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:105418180 (GRCh38)
14:105884517 (GRCh37)
Canonical SPDI:: NC_000014.9:105418179:A:G
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000042/11 (TOPMED)
HGVS:: NC_000014.9:g.105418180A>G, NC_000014.8:g.105884517A>G, NG_029515.1:g.3332A>G, NW_004166863.1:g.81347A>G, NR_125384.1:n.983T>C, NR_125385.1:n.848T>C

Select item 148351398519.

rs1483513985 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:105421075 (GRCh38)
14:105887412 (GRCh37)
Canonical SPDI:: NC_000014.9:105421074:C:T
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.105421075C>T, NC_000014.8:g.105887412C>T, NG_029515.1:g.6227C>T, NW_004166863.1:g.84242C>T

Select item 148271868120.

rs1482718681 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:105421375 (GRCh38)
14:105887712 (GRCh37)
Canonical SPDI:: NC_000014.9:105421374:C:G
Gene:: MTA1 (Varview), MTA1-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000014.9:g.105421375C>G, NC_000014.8:g.105887712C>G, NG_029515.1:g.6527C>G, NW_004166863.1:g.84542C>G

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