SNP Links for Gene (Select 100506795) - SNP

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Select item 14912775461.

rs1491277546 has merged into rs144889140 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GA,GAGAGA [Show Flanks]
Chromosome:: 1:234532264 (GRCh38)
1:234668010 (GRCh37)
Canonical SPDI:: NC_000001.11:234532262:AGAGA:A,NC_000001.11:234532262:AGAGA:AGA,NC_000001.11:234532262:AGAGA:AGAGAGA
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.0006/10 (TOMMO)
-=0.19202/712 (TWINSUK)
-=0.2273/876 (ALSPAC)
HGVS:: NC_000001.11:g.234532264_234532267del, NC_000001.11:g.234532264GA[1], NC_000001.11:g.234532264GA[3], NC_000001.10:g.234668010_234668013del, NC_000001.10:g.234668010GA[1], NC_000001.10:g.234668010GA[3]

Select item 14912672102.

rs1491267210 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:234529647 (GRCh38)
1:234665394 (GRCh37)
Canonical SPDI:: NC_000001.11:234529647:A:AA
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.234529648dup, NC_000001.10:g.234665394dup, NR_038426.1:n.1103dup

Select item 14912271803.

rs1491227180 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GC [Show Flanks]
Chromosome:: 1:234532227 (GRCh38)
1:234667974 (GRCh37)
Canonical SPDI:: NC_000001.11:234532227:C:CGC
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: CG=0.00002/1 (GnomAD)
HGVS:: NC_000001.11:g.234532228_234532229insGC, NC_000001.10:g.234667974_234667975insGC

Select item 14910817374.

rs1491081737 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:234532302 (GRCh38)
1:234668048 (GRCh37)
Canonical SPDI:: NC_000001.11:234532300:ACA:A
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: -=0.000036/5 (GnomAD)
HGVS:: NC_000001.11:g.234532302_234532303del, NC_000001.10:g.234668048_234668049del

Select item 14907935105.

rs1490793510 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:234531632 (GRCh38)
1:234667378 (GRCh37)
Canonical SPDI:: NC_000001.11:234531631:G:A
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000001.11:g.234531632G>A, NC_000001.10:g.234667378G>A, NR_038426.1:n.148C>T

Select item 14906799526.

rs1490679952 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:234529381 (GRCh38)
1:234665127 (GRCh37)
Canonical SPDI:: NC_000001.11:234529380:C:A
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.234529381C>A, NC_000001.10:g.234665127C>A, NR_038426.1:n.1370G>T

Select item 14906276557.

rs1490627655 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:234532487 (GRCh38)
1:234668233 (GRCh37)
Canonical SPDI:: NC_000001.11:234532486:A:G
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.234532487A>G, NC_000001.10:g.234668233A>G

Select item 14901905068.

rs1490190506 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:234528340 (GRCh38)
1:234664086 (GRCh37)
Canonical SPDI:: NC_000001.11:234528339:C:A
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.234528340C>A, NC_000001.10:g.234664086C>A, NR_038426.1:n.2411G>T

Select item 14899848109.

rs1489984810 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 1:234532501 (GRCh38)
1:234668247 (GRCh37)
Canonical SPDI:: NC_000001.11:234532500:G:
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000142/2 (ALFA)
-=0.00005/7 (GnomAD)
-=0.000053/14 (TOPMED)
HGVS:: NC_000001.11:g.234532501del, NC_000001.10:g.234668247del

Select item 148922528110.

rs1489225281 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:234532258 (GRCh38)
1:234668004 (GRCh37)
Canonical SPDI:: NC_000001.11:234532257:C:G,NC_000001.11:234532257:C:T
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.234532258C>G, NC_000001.11:g.234532258C>T, NC_000001.10:g.234668004C>G, NC_000001.10:g.234668004C>T

Select item 148824725911.

rs1488247259 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:234531982 (GRCh38)
1:234667728 (GRCh37)
Canonical SPDI:: NC_000001.11:234531981:A:C
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.234531982A>C, NC_000001.10:g.234667728A>C

Select item 148780837612.

rs1487808376 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:234531814 (GRCh38)
1:234667560 (GRCh37)
Canonical SPDI:: NC_000001.11:234531813:A:G
Gene:: LINC01354 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.234531814A>G, NC_000001.10:g.234667560A>G

Select item 148757403213.

rs1487574032 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:234530838 (GRCh38)
1:234666584 (GRCh37)
Canonical SPDI:: NC_000001.11:234530837:G:A
Gene:: LINC01354 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00007/1 (ALFA)
HGVS:: NC_000001.11:g.234530838G>A, NC_000001.10:g.234666584G>A

Select item 148583015014.

rs1485830150 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:234530943 (GRCh38)
1:234666689 (GRCh37)
Canonical SPDI:: NC_000001.11:234530942:C:T
Gene:: LINC01354 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.234530943C>T, NC_000001.10:g.234666689C>T

Select item 148555760315.

rs1485557603 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:234529981 (GRCh38)
1:234665727 (GRCh37)
Canonical SPDI:: NC_000001.11:234529980:C:T
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.234529981C>T, NC_000001.10:g.234665727C>T, NR_038426.1:n.770G>A

Select item 148530106816.

rs1485301068 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:234530610 (GRCh38)
1:234666356 (GRCh37)
Canonical SPDI:: NC_000001.11:234530609:C:T
Gene:: LINC01354 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.234530610C>T, NC_000001.10:g.234666356C>T

Select item 148472109217.

rs1484721092 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:234528600 (GRCh38)
1:234664346 (GRCh37)
Canonical SPDI:: NC_000001.11:234528599:C:T
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.234528600C>T, NC_000001.10:g.234664346C>T, NR_038426.1:n.2151G>A

Select item 148431772618.

rs1484317726 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:234530224 (GRCh38)
1:234665970 (GRCh37)
Canonical SPDI:: NC_000001.11:234530223:A:G
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000084/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.234530224A>G, NC_000001.10:g.234665970A>G, NR_038426.1:n.527T>C

Select item 148414520519.

rs1484145205 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:234528225 (GRCh38)
1:234663971 (GRCh37)
Canonical SPDI:: NC_000001.11:234528224:T:C
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.000342/1 (KOREAN)
C=0.000672/11 (TOMMO)
C=0.002729/5 (Korea1K)
HGVS:: NC_000001.11:g.234528225T>C, NC_000001.10:g.234663971T>C, NR_038426.1:n.2526A>G

Select item 148283318820.

rs1482833188 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:234531613 (GRCh38)
1:234667359 (GRCh37)
Canonical SPDI:: NC_000001.11:234531612:G:A
Gene:: LINC01354 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.234531613G>A, NC_000001.10:g.234667359G>A, NR_038426.1:n.167C>T

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