SNP Links for Gene (Select 100506371) - SNP

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Select item 14905946501.

rs1490594650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:189249 (GRCh38)
17:39040 (GRCh37)
Canonical SPDI:: NC_000017.11:189248:G:T
Gene:: LINC02091 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.189249G>T, NW_004070872.2:g.129247G>T, NW_003315952.3:g.128175G>T, NC_000017.10:g.39040G>T

Select item 14887997272.

rs1488799727 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:184364 (GRCh38)
17:34155 (GRCh37)
Canonical SPDI:: NC_000017.11:184363:G:A
Gene:: LINC02091 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.184364G>A, NW_004070872.2:g.124362G>A, NG_021143.2:g.2267C>T, NW_003315952.3:g.123296G>A, NC_000017.10:g.34155G>A, NR_104420.1:n.251C>T

Select item 14884815313.

rs1488481531 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:185545 (GRCh38)
17:35336 (GRCh37)
Canonical SPDI:: NC_000017.11:185544:A:G
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.185545A>G, NW_004070872.2:g.125543A>G, NG_021143.2:g.1086T>C, NW_003315952.3:g.124477A>G, NC_000017.10:g.35336A>G

Select item 14881225514.

rs1488122551 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:187974 (GRCh38)
17:37765 (GRCh37)
Canonical SPDI:: NC_000017.11:187973:C:T
Gene:: LINC02091 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.187974C>T, NW_004070872.2:g.127972C>T, NW_003315952.3:g.126907C>T, NC_000017.10:g.37765C>T

Select item 14880111925.

rs1488011192 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 17:188797 (GRCh38)
17:38588 (GRCh37)
Canonical SPDI:: NC_000017.11:188796:G:A,NC_000017.11:188796:G:T
Gene:: LINC02091 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000017.11:g.188797G>A, NC_000017.11:g.188797G>T, NW_004070872.2:g.128795G>A, NW_004070872.2:g.128795G>T, NW_003315952.3:g.127726G>A, NW_003315952.3:g.127726G>T, NC_000017.10:g.38588G>A, NC_000017.10:g.38588G>T

Select item 14878184116.

rs1487818411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:184690 (GRCh38)
17:34481 (GRCh37)
Canonical SPDI:: NC_000017.11:184689:C:G
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.184690C>G, NW_004070872.2:g.124688C>G, NG_021143.2:g.1941G>C, NW_003315952.3:g.123622C>G, NC_000017.10:g.34481C>G

Select item 14861128297.

rs1486112829 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:184993 (GRCh38)
17:34784 (GRCh37)
Canonical SPDI:: NC_000017.11:184992:G:A
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000214/3 (ALFA)
A=0.000029/4 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000017.11:g.184993G>A, NW_004070872.2:g.124991G>A, NG_021143.2:g.1638C>T, NW_003315952.3:g.123925G>A, NC_000017.10:g.34784G>A

Select item 14859042608.

rs1485904260 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:186459 (GRCh38)
17:36250 (GRCh37)
Canonical SPDI:: NC_000017.11:186458:G:A
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.186459G>A, NW_004070872.2:g.126457G>A, NG_021143.2:g.172C>T, NW_003315952.3:g.125391G>A, NC_000017.10:g.36250G>A

Select item 14850753909.

rs1485075390 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:183330 (GRCh38)
17:33121 (GRCh37)
Canonical SPDI:: NC_000017.11:183329:G:A
Gene:: DOC2B (Varview), LINC02091 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00013/2 (ALFA)
HGVS:: NC_000017.11:g.183330G>A, NW_004070872.2:g.123328G>A, NG_021143.2:g.3301C>T, NW_003315952.3:g.122262G>A, NC_000017.10:g.33121G>A

Select item 148499258110.

rs1484992581 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 17:186023 (GRCh38)
17:35814 (GRCh37)
Canonical SPDI:: NC_000017.11:186022:CC:C
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.186024del, NW_004070872.2:g.126022del, NG_021143.2:g.608del, NW_003315952.3:g.124956del, NC_000017.10:g.35815del

Select item 148492212511.

rs1484922125 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:186845 (GRCh38)
17:36636 (GRCh37)
Canonical SPDI:: NC_000017.11:186844:G:A
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.186845G>A, NW_004070872.2:g.126843G>A, NW_003315952.3:g.125777G>A, NC_000017.10:g.36636G>A

Select item 148435787012.

rs1484357870 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:186909 (GRCh38)
17:36700 (GRCh37)
Canonical SPDI:: NC_000017.11:186908:T:A
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.186909T>A, NW_004070872.2:g.126907T>A, NW_003315952.3:g.125841T>A, NC_000017.10:g.36700T>A

Select item 148383538813.

rs1483835388 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:188002 (GRCh38)
17:37793 (GRCh37)
Canonical SPDI:: NC_000017.11:188001:T:G
Gene:: LINC02091 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000017.11:g.188002T>G, NW_004070872.2:g.128000T>G, NW_003315952.3:g.126931T>G, NC_000017.10:g.37793T>G

Select item 148326593314.

rs1483265933 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:188052 (GRCh38)
17:37843 (GRCh37)
Canonical SPDI:: NC_000017.11:188051:G:A
Gene:: LINC02091 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.188052G>A, NW_004070872.2:g.128050G>A, NW_003315952.3:g.126981G>A, NC_000017.10:g.37843G>A

Select item 148310431815.

rs1483104318 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 17:185876 (GRCh38)
17:35667 (GRCh37)
Canonical SPDI:: NC_000017.11:185875:A:C
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000017.11:g.185876A>C, NW_004070872.2:g.125874A>C, NG_021143.2:g.755T>G, NW_003315952.3:g.124808A>C, NC_000017.10:g.35667A>C

Select item 148295457616.

rs1482954576 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:187692 (GRCh38)
17:37483 (GRCh37)
Canonical SPDI:: NC_000017.11:187691:A:T
Gene:: LINC02091 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.187692A>T, NW_004070872.2:g.127690A>T, NW_003315952.3:g.126624A>T, NC_000017.10:g.37483A>T

Select item 148290241417.

rs1482902414 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 17:186624 (GRCh38)
17:36415 (GRCh37)
Canonical SPDI:: NC_000017.11:186623:A:C,NC_000017.11:186623:A:G
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.186624A>C, NC_000017.11:g.186624A>G, NW_004070872.2:g.126622A>C, NW_004070872.2:g.126622A>G, NG_021143.2:g.7T>G, NG_021143.2:g.7T>C, NW_003315952.3:g.125556A>C, NW_003315952.3:g.125556A>G, NC_000017.10:g.36415A>C, NC_000017.10:g.36415A>G

Select item 148285245618.

rs1482852456 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 17:188353 (GRCh38)
17:38144 (GRCh37)
Canonical SPDI:: NC_000017.11:188352:G:C,NC_000017.11:188352:G:T
Gene:: LINC02091 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.188353G>C, NC_000017.11:g.188353G>T, NW_004070872.2:g.128351G>C, NW_004070872.2:g.128351G>T, NW_003315952.3:g.127282G>C, NW_003315952.3:g.127282G>T, NC_000017.10:g.38144G>C, NC_000017.10:g.38144G>T

Select item 148274495619.

rs1482744956 has merged into rs768488798 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCT>-,CCTCCT [Show Flanks]
Chromosome:: 17:185793 (GRCh38)
17:35584 (GRCh37)
Canonical SPDI:: NC_000017.11:185787:CTCCTCCT:CTCCT,NC_000017.11:185787:CTCCTCCT:CTCCTCCTCCT
Gene:: LINC02091 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCCT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.185790CCT[1], NC_000017.11:g.185790CCT[3], NW_004070872.2:g.125788CCT[1], NW_004070872.2:g.125788CCT[3], NG_021143.2:g.838GAG[1], NG_021143.2:g.838GAG[3], NW_003315952.3:g.124722CCT[1], NW_003315952.3:g.124722CCT[3], NC_000017.10:g.35581CCT[1], NC_000017.10:g.35581CCT[3]

Select item 148261996320.

rs1482619963 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:184217 (GRCh38)
17:34008 (GRCh37)
Canonical SPDI:: NC_000017.11:184216:A:G
Gene:: LINC02091 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.184217A>G, NW_004070872.2:g.124215A>G, NG_021143.2:g.2414T>C, NW_003315952.3:g.123149A>G, NC_000017.10:g.34008A>G, NR_104420.1:n.398T>C

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