SNP Links for Gene (Select 100506100) - SNP

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Select item 14913784761.

rs1491378476 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 9:128725491 (GRCh38)
9:131487770 (GRCh37)
Canonical SPDI:: NC_000009.12:128725490:CT:
Gene:: ZDHHC12 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000009.12:g.128725491_128725492del, NC_000009.11:g.131487770_131487771del

Select item 14908921712.

rs1490892171 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:128732635 (GRCh38)
9:131494914 (GRCh37)
Canonical SPDI:: NC_000009.12:128732634:G:T
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.128732635G>T, NC_000009.11:g.131494914G>T

Select item 14907870273.

rs1490787027 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:128724631 (GRCh38)
9:131486910 (GRCh37)
Canonical SPDI:: NC_000009.12:128724630:T:C
Gene:: ZDHHC12 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000283/5 (TOMMO)
HGVS:: NC_000009.12:g.128724631T>C, NC_000009.11:g.131486910T>C, NR_046240.1:n.170T>C

Select item 14906032844.

rs1490603284 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:128723476 (GRCh38)
9:131485755 (GRCh37)
Canonical SPDI:: NC_000009.12:128723475:T:G
Gene:: ZDHHC12 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00481/57 (ALFA)
G=0.00043/7 (TOMMO)
G=0.01341/39 (KOREAN)
HGVS:: NC_000009.12:g.128723476T>G, NC_000009.11:g.131485755T>G

Select item 14906019135.

rs1490601913 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCCGCTGTGCCCTCCCCCGCG>-,CTCCGCTGTGCCCTCCCCCGCGCTCCGCTGTGCCCTCCCCCGCG [Show Flanks]
Chromosome:: 9:128724386 (GRCh38)
9:131486665 (GRCh37)
Canonical SPDI:: NC_000009.12:128724374:CCTCCCCCGCGCTCCGCTGTGCCCTCCCCCGCG:CCTCCCCCGCG,NC_000009.12:128724374:CCTCCCCCGCGCTCCGCTGTGCCCTCCCCCGCG:CCTCCCCCGCGCTCCGCTGTGCCCTCCCCCGCGCTCCGCTGTGCCCTCCCCCGCG
Gene:: ZDHHC12 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCTCCCCCGCG=0./0 (ALFA)
CCTCCCCCGCGCTCCGCTGTGC=0.00021/4 (TOMMO)
CCTCCCCCGCGCTCCGCTGTGC=0.00056/1 (Korea1K)
HGVS:: NC_000009.12:g.128724386_128724407del, NC_000009.12:g.128724386_128724407dup, NC_000009.11:g.131486665_131486686del, NC_000009.11:g.131486665_131486686dup

Select item 14901108586.

rs1490110858 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:128725513 (GRCh38)
9:131487792 (GRCh37)
Canonical SPDI:: NC_000009.12:128725512:A:T
Gene:: ZDHHC12 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.00074/21 (TOMMO)
HGVS:: NC_000009.12:g.128725513A>T, NC_000009.11:g.131487792A>T

Select item 14900410837.

rs1490041083 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:128726209 (GRCh38)
9:131488488 (GRCh37)
Canonical SPDI:: NC_000009.12:128726208:C:G,NC_000009.12:128726208:C:T
Gene:: ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
G=0.000071/2 (TOMMO)
HGVS:: NC_000009.12:g.128726209C>G, NC_000009.12:g.128726209C>T, NC_000009.11:g.131488488C>G, NC_000009.11:g.131488488C>T

Select item 14897011118.

rs1489701111 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 9:128733019 (GRCh38)
9:131495298 (GRCh37)
Canonical SPDI:: NC_000009.12:128733018:AAA:AA
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128733021del, NC_000009.11:g.131495300del, NR_046240.1:n.354del

Select item 14895136109.

rs1489513610 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:128730379 (GRCh38)
9:131492658 (GRCh37)
Canonical SPDI:: NC_000009.12:128730378:G:C
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128730379G>C, NC_000009.11:g.131492658G>C, NM_006336.4:c.*958C>G, NM_006336.3:c.*958C>G, XM_017014187.3:c.*958C>G, XM_017014187.2:c.*958C>G, XM_017014187.1:c.*958C>G, XM_017014188.2:c.*958C>G, XM_017014188.1:c.*958C>G, NM_001375955.1:c.*958C>G, NM_001375957.1:c.*958C>G, NM_001375956.1:c.*958C>G, NM_001375954.1:c.*958C>G, NM_001375958.1:c.*958C>G, NM_001375959.1:c.*958C>G

Select item 148871874810.

rs1488718748 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:128733617 (GRCh38)
9:131495896 (GRCh37)
Canonical SPDI:: NC_000009.12:128733616:C:A
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128733617C>A, NC_000009.11:g.131495896C>A

Select item 148810592411.

rs1488105924 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:128723077 (GRCh38)
9:131485356 (GRCh37)
Canonical SPDI:: NC_000009.12:128723076:T:C
Gene:: ZDHHC12 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000009.12:g.128723077T>C, NC_000009.11:g.131485356T>C

Select item 148778123912.

rs1487781239 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:128731162 (GRCh38)
9:131493441 (GRCh37)
Canonical SPDI:: NC_000009.12:128731161:A:G
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.128731162A>G, NC_000009.11:g.131493441A>G, NM_006336.4:c.*175T>C, NM_006336.3:c.*175T>C, XM_017014187.3:c.*175T>C, XM_017014187.2:c.*175T>C, XM_017014187.1:c.*175T>C, XM_017014188.2:c.*175T>C, XM_017014188.1:c.*175T>C, NM_001375955.1:c.*175T>C, NM_001375957.1:c.*175T>C, NM_001375956.1:c.*175T>C, NM_001375954.1:c.*175T>C, NM_001375958.1:c.*175T>C, NM_001375959.1:c.*175T>C

Select item 148764983913.

rs1487649839 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:128730215 (GRCh38)
9:131492494 (GRCh37)
Canonical SPDI:: NC_000009.12:128730214:G:A
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000036/5 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000009.12:g.128730215G>A, NC_000009.11:g.131492494G>A, NM_006336.4:c.*1122C>T, NM_006336.3:c.*1122C>T, XM_017014187.3:c.*1122C>T, XM_017014187.2:c.*1122C>T, XM_017014187.1:c.*1122C>T, XM_017014188.2:c.*1122C>T, XM_017014188.1:c.*1122C>T, NM_001375955.1:c.*1122C>T, NM_001375957.1:c.*1122C>T, NM_001375956.1:c.*1122C>T, NM_001375954.1:c.*1122C>T, NM_001375958.1:c.*1122C>T, NM_001375959.1:c.*1122C>T

Select item 148759954414.

rs1487599544 [Homo sapiens]

Variant type:: INS
Alleles:: ->GC [Show Flanks]
Chromosome:: 9:128727982 (GRCh38)
9:131490262 (GRCh37)
Canonical SPDI:: NC_000009.12:128727982::GC
Gene:: ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GC=0./0 (ALFA)
GC=0.000007/1 (GnomAD)
GC=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.128727982_128727983insGC, NC_000009.11:g.131490261_131490262insGC

Select item 148752867915.

rs1487528679 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:128726204 (GRCh38)
9:131488483 (GRCh37)
Canonical SPDI:: NC_000009.12:128726203:G:A
Gene:: ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128726204G>A, NC_000009.11:g.131488483G>A

Select item 148734742616.

rs1487347426 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:128723973 (GRCh38)
9:131486252 (GRCh37)
Canonical SPDI:: NC_000009.12:128723972:G:A
Gene:: ZDHHC12 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128723973G>A, NC_000009.11:g.131486252G>A

Select item 148712168817.

rs1487121688 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:128731949 (GRCh38)
9:131494228 (GRCh37)
Canonical SPDI:: NC_000009.12:128731948:T:C
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.128731949T>C, NC_000009.11:g.131494228T>C

Select item 148701804918.

rs1487018049 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:128727138 (GRCh38)
9:131489417 (GRCh37)
Canonical SPDI:: NC_000009.12:128727137:A:G
Gene:: ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128727138A>G, NC_000009.11:g.131489417A>G

Select item 148641599319.

rs1486415993 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:128732979 (GRCh38)
9:131495258 (GRCh37)
Canonical SPDI:: NC_000009.12:128732978:A:G
Gene:: ZER1 (Varview), ZDHHC12-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (KOREAN)
G=0.000014/2 (GnomAD)
G=0.000042/11 (TOPMED)
HGVS:: NC_000009.12:g.128732979A>G, NC_000009.11:g.131495258A>G, NR_046240.1:n.312A>G

Select item 148636583920.

rs1486365839 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:128728189 (GRCh38)
9:131490468 (GRCh37)
Canonical SPDI:: NC_000009.12:128728188:C:T
Gene:: ZDHHC12-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.128728189C>T, NC_000009.11:g.131490468C>T

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