SNP Links for Gene (Select 100505893) - SNP

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Links from Gene

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Select item 14913858211.

rs1491385821 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 4:20390760 (GRCh38)
4:20392384 (GRCh37)
Canonical SPDI:: NC_000004.12:20390760::G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.00008/1 (ALFA)
G=0.00014/10 (GnomAD)
HGVS:: NC_000004.12:g.20390760_20390761insG, NC_000004.11:g.20392383_20392384insG, NG_047105.1:g.143836_143837insG

Select item 14912229662.

rs1491222966 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA [Show Flanks]
Chromosome:: 4:20390771 (GRCh38)
4:20392395 (GRCh37)
Canonical SPDI:: NC_000004.12:20390771::TA
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TA=0./0 (ALFA)
HGVS:: NC_000004.12:g.20390771_20390772insTA, NC_000004.11:g.20392394_20392395insTA, NG_047105.1:g.143847_143848insTA

Select item 14911574663.

rs1491157466 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 4:20390771 (GRCh38)
4:20392394 (GRCh37)
Canonical SPDI:: NC_000004.12:20390770:TA:
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00143/17 (ALFA)
-=0.00352/2 (NorthernSweden)
-=0.0047/341 (GnomAD)
-=0.01295/23 (Korea1K)
-=0.01907/308 (TOMMO)
HGVS:: NC_000004.12:g.20390771_20390772del, NC_000004.11:g.20392394_20392395del, NG_047105.1:g.143847_143848del

Select item 14903578484.

rs1490357848 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:20393013 (GRCh38)
4:20394636 (GRCh37)
Canonical SPDI:: NC_000004.12:20393012:T:C
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20393013T>C, NC_000004.11:g.20394636T>C, NG_047105.1:g.146089T>C

Select item 14898698195.

rs1489869819 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:20393426 (GRCh38)
4:20395049 (GRCh37)
Canonical SPDI:: NC_000004.12:20393425:C:G,NC_000004.12:20393425:C:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.20393426C>G, NC_000004.12:g.20393426C>T, NC_000004.11:g.20395049C>G, NC_000004.11:g.20395049C>T, NG_047105.1:g.146502C>G, NG_047105.1:g.146502C>T, NR_037876.2:n.152C>G, NR_037876.2:n.152C>T

Select item 14891914896.

rs1489191489 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 4:20391232 (GRCh38)
4:20392855 (GRCh37)
Canonical SPDI:: NC_000004.12:20391231:A:C,NC_000004.12:20391231:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20391232A>C, NC_000004.12:g.20391232A>G, NC_000004.11:g.20392855A>C, NC_000004.11:g.20392855A>G, NG_047105.1:g.144308A>C, NG_047105.1:g.144308A>G

Select item 14891408427.

rs1489140842 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 4:20390405 (GRCh38)
4:20392028 (GRCh37)
Canonical SPDI:: NC_000004.12:20390404:A:C,NC_000004.12:20390404:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000004.12:g.20390405A>C, NC_000004.12:g.20390405A>G, NC_000004.11:g.20392028A>C, NC_000004.11:g.20392028A>G, NG_047105.1:g.143481A>C, NG_047105.1:g.143481A>G

Select item 14889684308.

rs1488968430 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 4:20392076 (GRCh38)
4:20393699 (GRCh37)
Canonical SPDI:: NC_000004.12:20392075:G:C
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20392076G>C, NC_000004.11:g.20393699G>C, NG_047105.1:g.145152G>C

Select item 14888670099.

rs1488867009 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 4:20390780 (GRCh38)
4:20392404 (GRCh37)
Canonical SPDI:: NC_000004.12:20390780:T:TGT
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TGT=0./0 (ALFA)
HGVS:: NC_000004.12:g.20390781_20390782insGT, NC_000004.11:g.20392404_20392405insGT, NG_047105.1:g.143857_143858insGT

Select item 148870187610.

rs1488701876 [Homo sapiens]

Variant type:: DEL
Alleles:: AAAAT>- [Show Flanks]
Chromosome:: 4:20390280 (GRCh38)
4:20391903 (GRCh37)
Canonical SPDI:: NC_000004.12:20390279:AAAAT:
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20390280_20390284del, NC_000004.11:g.20391903_20391907del, NG_047105.1:g.143356_143360del

Select item 148867029311.

rs1488670293 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:20391099 (GRCh38)
4:20392722 (GRCh37)
Canonical SPDI:: NC_000004.12:20391098:C:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.20391099C>T, NC_000004.11:g.20392722C>T, NG_047105.1:g.144175C>T

Select item 148862930912.

rs1488629309 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:20393979 (GRCh38)
4:20395602 (GRCh37)
Canonical SPDI:: NC_000004.12:20393978:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20393979A>G, NC_000004.11:g.20395602A>G, NG_047105.1:g.147055A>G

Select item 148853558413.

rs1488535584 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:20391361 (GRCh38)
4:20392984 (GRCh37)
Canonical SPDI:: NC_000004.12:20391360:G:A
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20391361G>A, NC_000004.11:g.20392984G>A, NG_047105.1:g.144437G>A

Select item 148813148114.

rs1488131481 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 4:20391152 (GRCh38)
4:20392775 (GRCh37)
Canonical SPDI:: NC_000004.12:20391151:C:A,NC_000004.12:20391151:C:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.20391152C>A, NC_000004.12:g.20391152C>T, NC_000004.11:g.20392775C>A, NC_000004.11:g.20392775C>T, NG_047105.1:g.144228C>A, NG_047105.1:g.144228C>T

Select item 148756364515.

rs1487563645 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:20390508 (GRCh38)
4:20392131 (GRCh37)
Canonical SPDI:: NC_000004.12:20390507:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.20390508A>G, NC_000004.11:g.20392131A>G, NG_047105.1:g.143584A>G

Select item 148692268016.

rs1486922680 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:20392227 (GRCh38)
4:20393850 (GRCh37)
Canonical SPDI:: NC_000004.12:20392226:C:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000004.12:g.20392227C>G, NC_000004.11:g.20393850C>G, NG_047105.1:g.145303C>G, NR_037876.2:n.39C>G

Select item 148635344617.

rs1486353446 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:20391428 (GRCh38)
4:20393051 (GRCh37)
Canonical SPDI:: NC_000004.12:20391427:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20391428A>G, NC_000004.11:g.20393051A>G, NG_047105.1:g.144504A>G

Select item 148537165018.

rs1485371650 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:20390517 (GRCh38)
4:20392140 (GRCh37)
Canonical SPDI:: NC_000004.12:20390516:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000108/2 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000071/1 (TOMMO)
G=0.000079/11 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000004.12:g.20390517A>G, NC_000004.11:g.20392140A>G, NG_047105.1:g.143593A>G

Select item 148404810719.

rs1484048107 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 4:20394370 (GRCh38)
4:20395993 (GRCh37)
Canonical SPDI:: NC_000004.12:20394369:A:G,NC_000004.12:20394369:A:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.20394370A>G, NC_000004.12:g.20394370A>T, NC_000004.11:g.20395993A>G, NC_000004.11:g.20395993A>T, NG_047105.1:g.147446A>G, NG_047105.1:g.147446A>T

Select item 148400524920.

rs1484005249 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:20393517 (GRCh38)
4:20395140 (GRCh37)
Canonical SPDI:: NC_000004.12:20393516:C:A
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.20393517C>A, NC_000004.11:g.20395140C>A, NG_047105.1:g.146593C>A