SNP Links for Gene (Select 100302118) - SNP

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Select item 14887152101.

rs1488715210 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 22:20249101 (GRCh38)
22:20236624 (GRCh37)
Canonical SPDI:: NC_000022.11:20249100:C:A,NC_000022.11:20249100:C:G
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.20249101C>A, NC_000022.11:g.20249101C>G, NC_000022.10:g.20236624C>A, NC_000022.10:g.20236624C>G, NG_012176.2:g.24193G>T, NG_012176.2:g.24193G>C

Select item 14880628332.

rs1488062833 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:20249938 (GRCh38)
22:20237461 (GRCh37)
Canonical SPDI:: NC_000022.11:20249937:G:T
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20249938G>T, NC_000022.10:g.20237461G>T, NG_012176.2:g.23356C>A

Select item 14866557293.

rs1486655729 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20251071 (GRCh38)
22:20238594 (GRCh37)
Canonical SPDI:: NC_000022.11:20251070:C:T
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000022.11:g.20251071C>T, NC_000022.10:g.20238594C>T, NG_012176.2:g.22223G>A

Select item 14831733204.

rs1483173320 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 22:20249471 (GRCh38)
22:20236994 (GRCh37)
Canonical SPDI:: NC_000022.11:20249470:A:C
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20249471A>C, NC_000022.10:g.20236994A>C, NG_012176.2:g.23823T>G

Select item 14830755695.

rs1483075569 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20249815 (GRCh38)
22:20237338 (GRCh37)
Canonical SPDI:: NC_000022.11:20249814:G:A
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.20249815G>A, NC_000022.10:g.20237338G>A, NG_012176.2:g.23479C>T

Select item 14825252846.

rs1482525284 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:20249349 (GRCh38)
22:20236872 (GRCh37)
Canonical SPDI:: NC_000022.11:20249348:G:C
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20249349G>C, NC_000022.10:g.20236872G>C, NG_012176.2:g.23945C>G

Select item 14817368757.

rs1481736875 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20250035 (GRCh38)
22:20237558 (GRCh37)
Canonical SPDI:: NC_000022.11:20250034:G:A
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000071/1 (TOMMO)
HGVS:: NC_000022.11:g.20250035G>A, NC_000022.10:g.20237558G>A, NG_012176.2:g.23259C>T

Select item 14812627288.

rs1481262728 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:20250350 (GRCh38)
22:20237873 (GRCh37)
Canonical SPDI:: NC_000022.11:20250349:C:G,NC_000022.11:20250349:C:T
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000566/9 (TOMMO)
T=0.001027/3 (KOREAN)
T=0.002183/4 (Korea1K)
HGVS:: NC_000022.11:g.20250350C>G, NC_000022.11:g.20250350C>T, NC_000022.10:g.20237873C>G, NC_000022.10:g.20237873C>T, NG_012176.2:g.22944G>C, NG_012176.2:g.22944G>A

Select item 14810184109.

rs1481018410 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:20250009 (GRCh38)
22:20237532 (GRCh37)
Canonical SPDI:: NC_000022.11:20250008:C:A,NC_000022.11:20250008:C:T
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000022.11:g.20250009C>A, NC_000022.11:g.20250009C>T, NC_000022.10:g.20237532C>A, NC_000022.10:g.20237532C>T, NG_012176.2:g.23285G>T, NG_012176.2:g.23285G>A

Select item 147880487710.

rs1478804877 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20249625 (GRCh38)
22:20237148 (GRCh37)
Canonical SPDI:: NC_000022.11:20249624:G:A
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.20249625G>A, NC_000022.10:g.20237148G>A, NG_012176.2:g.23669C>T

Select item 147726401111.

rs1477264011 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 22:20250389 (GRCh38)
22:20237912 (GRCh37)
Canonical SPDI:: NC_000022.11:20250388:A:C
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000094/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20250389A>C, NC_000022.10:g.20237912A>C, NG_012176.2:g.22905T>G

Select item 147567617912.

rs1475676179 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 22:20250880 (GRCh38)
22:20238403 (GRCh37)
Canonical SPDI:: NC_000022.11:20250879:C:
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000022.11:g.20250880del, NC_000022.10:g.20238403del, NG_012176.2:g.22414del

Select item 147319685313.

rs1473196853 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20249813 (GRCh38)
22:20237336 (GRCh37)
Canonical SPDI:: NC_000022.11:20249812:C:T
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20249813C>T, NC_000022.10:g.20237336C>T, NG_012176.2:g.23481G>A

Select item 147313131514.

rs1473131315 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:20249092 (GRCh38)
22:20236615 (GRCh37)
Canonical SPDI:: NC_000022.11:20249091:A:G
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20249092A>G, NC_000022.10:g.20236615A>G, NG_012176.2:g.24202T>C

Select item 147271856915.

rs1472718569 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:20249557 (GRCh38)
22:20237080 (GRCh37)
Canonical SPDI:: NC_000022.11:20249556:A:G
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000022.11:g.20249557A>G, NC_000022.10:g.20237080A>G, NG_012176.2:g.23737T>C

Select item 147253647816.

rs1472536478 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:20250847 (GRCh38)
22:20238370 (GRCh37)
Canonical SPDI:: NC_000022.11:20250846:A:G
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/2 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.20250847A>G, NC_000022.10:g.20238370A>G, NG_012176.2:g.22447T>C

Select item 147225910917.

rs1472259109 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:20251197 (GRCh38)
22:20238720 (GRCh37)
Canonical SPDI:: NC_000022.11:20251196:A:G
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20251197A>G, NC_000022.10:g.20238720A>G, NG_012176.2:g.22097T>C

Select item 147173494718.

rs1471734947 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20250950 (GRCh38)
22:20238473 (GRCh37)
Canonical SPDI:: NC_000022.11:20250949:G:A
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000029/4 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000106/2 (TOMMO)
HGVS:: NC_000022.11:g.20250950G>A, NC_000022.10:g.20238473G>A, NG_012176.2:g.22344C>T

Select item 147153941719.

rs1471539417 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:20248725 (GRCh38)
22:20236248 (GRCh37)
Canonical SPDI:: NC_000022.11:20248724:G:A,NC_000022.11:20248724:G:T
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
HGVS:: NC_000022.11:g.20248725G>A, NC_000022.11:g.20248725G>T, NC_000022.10:g.20236248G>A, NC_000022.10:g.20236248G>T, NG_012176.2:g.24569C>T, NG_012176.2:g.24569C>A

Select item 147030288620.

rs1470302886 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:20250585 (GRCh38)
22:20238108 (GRCh37)
Canonical SPDI:: NC_000022.11:20250584:C:A
Gene:: RTN4R (Varview), MIR1286 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20250585C>A, NC_000022.10:g.20238108C>A, NG_012176.2:g.22709G>T

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