SNP Links for Gene (Select 100288615) - SNP

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Select item 14915031421.

rs1491503142 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTTA [Show Flanks]
Chromosome:: 15:32522335 (GRCh38)
15:32814537 (GRCh37)
Canonical SPDI:: NC_000015.10:32522335:TAGTTA:TAGTTAGTTA
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAGTTAGTTA=0./0 (ALFA)
TAGT=0.000007/1 (GnomAD)
TAGT=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.32522338_32522341dup, NC_000015.9:g.32814539_32814542dup, NW_011332701.1:g.4574467_4574470dup, NT_187660.1:g.4736919_4736922dup, NW_012132920.1:g.2040720_2040723dup

Select item 14914075302.

rs1491407530 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 15:32532014 (GRCh38)
15:32824216 (GRCh37)
Canonical SPDI:: NC_000015.10:32532014:C:CC
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.00012/10 (GnomAD)
HGVS:: NC_000015.10:g.32532015dup, NC_000015.9:g.32824216dup, NW_011332701.1:g.4584144dup, NT_187660.1:g.4746596dup, NW_012132920.1:g.2050371dup

Select item 14912901763.

rs1491290176 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:32522336 (GRCh38)
15:32814537 (GRCh37)
Canonical SPDI:: NC_000015.10:32522334:ATA:A
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.32522336_32522337del, NC_000015.9:g.32814537_32814538del, NW_011332701.1:g.4574465_4574466del, NT_187660.1:g.4736917_4736918del, NW_012132920.1:g.2040718_2040719del

Select item 14912565954.

rs1491256595 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:32532015 (GRCh38)
15:32824216 (GRCh37)
Canonical SPDI:: NC_000015.10:32532013:ACA:A
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.32532015_32532016del, NC_000015.9:g.32824216_32824217del, NW_011332701.1:g.4584144_4584145del, NT_187660.1:g.4746596_4746597del, NW_012132920.1:g.2050371_2050372del

Select item 14909172225.

rs1490917222 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CACATA [Show Flanks]
Chromosome:: 15:32531648 (GRCh38)
15:32823850 (GRCh37)
Canonical SPDI:: NC_000015.10:32531648:ATA:ATACACATA
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATACACATA=0./0 (ALFA)
HGVS:: NC_000015.10:g.32531651_32531652insCACATA, NC_000015.9:g.32823852_32823853insCACATA, NW_011332701.1:g.4583778_4583779insCACATA, NT_187660.1:g.4746230_4746231insCACATA, NW_012132920.1:g.2050006_2050007insCACATA

Select item 14908049606.

rs1490804960 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:32519560 (GRCh38)
15:32811761 (GRCh37)
Canonical SPDI:: NC_000015.10:32519559:G:A
Gene:: WHAMMP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000083/22 (TOPMED)
A=0.000095/13 (GnomAD)
HGVS:: NC_000015.10:g.32519560G>A, NC_000015.9:g.32811761G>A, NW_011332701.1:g.4571676G>A, NT_187660.1:g.4734128G>A, NW_012132920.1:g.2037931G>A

Select item 14904528637.

rs1490452863 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:32535183 (GRCh38)
15:32827384 (GRCh37)
Canonical SPDI:: NC_000015.10:32535182:G:A
Gene:: WHAMMP1 (Varview), LINC02256 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000184/3 (ALFA)
A=0.000183/22 (GnomAD)
HGVS:: NC_000015.10:g.32535183G>A, NC_000015.9:g.32827384G>A, NW_011332701.1:g.4587311G>A, NT_187660.1:g.4749763G>A, NW_012132920.1:g.2053541G>A

Select item 14904373788.

rs1490437378 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:32532059 (GRCh38)
15:32824260 (GRCh37)
Canonical SPDI:: NC_000015.10:32532058:T:A,NC_000015.10:32532058:T:C
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000843/10 (ALFA)
C=0.000625/4 (1000Genomes)
C=0.001227/130 (GnomAD)
A=0.030907/90 (KOREAN)
HGVS:: NC_000015.10:g.32532059T>A, NC_000015.10:g.32532059T>C, NC_000015.9:g.32824260T>A, NC_000015.9:g.32824260T>C, NW_011332701.1:g.4584188T>A, NW_011332701.1:g.4584188T>C, NT_187660.1:g.4746640T>A, NT_187660.1:g.4746640T>C, NW_012132920.1:g.2050415T>A, NW_012132920.1:g.2050415T>C

Select item 14904224789.

rs1490422478 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:32531572 (GRCh38)
15:32823773 (GRCh37)
Canonical SPDI:: NC_000015.10:32531571:C:T
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000253/3 (ALFA)
T=0.000019/2 (GnomAD)
T=0.001462/4 (KOREAN)
HGVS:: NC_000015.10:g.32531572C>T, NC_000015.9:g.32823773C>T, NW_011332701.1:g.4583699C>T, NT_187660.1:g.4746151C>T, NW_012132920.1:g.2049941C>T

Select item 149037999310.

rs1490379993 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:32530982 (GRCh38)
15:32823183 (GRCh37)
Canonical SPDI:: NC_000015.10:32530981:T:C
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.32530982T>C, NC_000015.9:g.32823183T>C, NW_011332701.1:g.4583111T>C, NT_187660.1:g.4745563T>C, NW_012132920.1:g.2049363T>C

Select item 149029117111.

rs1490291171 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>C
Chromosome:: no mapping
Canonical SPDI:

Select item 149027570112.

rs1490275701 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:32531523 (GRCh38)
15:32823724 (GRCh37)
Canonical SPDI:: NC_000015.10:32531522:A:G
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.32531523A>G, NC_000015.9:g.32823724A>G, NW_011332701.1:g.4583652A>G, NT_187660.1:g.4746104A>G, NW_012132920.1:g.2049904A>G

Select item 149009910413.

rs1490099104 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:32531985 (GRCh38)
15:32824186 (GRCh37)
Canonical SPDI:: NC_000015.10:32531984:C:G,NC_000015.10:32531984:C:T
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.32531985C>G, NC_000015.10:g.32531985C>T, NC_000015.9:g.32824186C>G, NC_000015.9:g.32824186C>T, NW_011332701.1:g.4584112C>G, NW_011332701.1:g.4584112C>T, NT_187660.1:g.4746564C>G, NT_187660.1:g.4746564C>T, NW_012132920.1:g.2050340C>G, NW_012132920.1:g.2050340C>T

Select item 148997754914.

rs1489977549 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:32523689 (GRCh38)
15:32815890 (GRCh37)
Canonical SPDI:: NC_000015.10:32523688:C:T
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.32523689C>T, NC_000015.9:g.32815890C>T, NW_011332701.1:g.4575818C>T, NT_187660.1:g.4738270C>T, NW_012132920.1:g.2042071C>T

Select item 148958726215.

rs1489587262 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 15:32532363 (GRCh38)
15:32824565 (GRCh37)
Canonical SPDI:: NC_000015.10:32532363:AA:AAA
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.32532365dup, NC_000015.9:g.32824566dup, NW_011332701.1:g.4584494dup, NT_187660.1:g.4746946dup, NW_012132920.1:g.2050721dup

Select item 148936601316.

rs1489366013 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:32521587 (GRCh38)
15:32813788 (GRCh37)
Canonical SPDI:: NC_000015.10:32521586:A:C,NC_000015.10:32521586:A:G
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000106/2 (TOMMO)
C=0.000156/1 (1000Genomes)
G=0.000685/2 (KOREAN)
HGVS:: NC_000015.10:g.32521587A>C, NC_000015.10:g.32521587A>G, NC_000015.9:g.32813788A>C, NC_000015.9:g.32813788A>G, NW_011332701.1:g.4573716A>C, NW_011332701.1:g.4573716A>G, NT_187660.1:g.4736168A>C, NT_187660.1:g.4736168A>G, NW_012132920.1:g.2039969A>C, NW_012132920.1:g.2039969A>G

Select item 148910250917.

rs1489102509 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:32531074 (GRCh38)
15:32823275 (GRCh37)
Canonical SPDI:: NC_000015.10:32531073:A:G
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000684/2 (KOREAN)
HGVS:: NC_000015.10:g.32531074A>G, NC_000015.9:g.32823275A>G, NW_011332701.1:g.4583203A>G, NT_187660.1:g.4745655A>G, NW_012132920.1:g.2049455A>G

Select item 148856240218.

rs1488562402 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:32521165 (GRCh38)
15:32813366 (GRCh37)
Canonical SPDI:: NC_000015.10:32521164:G:C
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.32521165G>C, NC_000015.9:g.32813366G>C, NW_011332701.1:g.4573294G>C, NT_187660.1:g.4735746G>C, NW_012132920.1:g.2039547G>C

Select item 148843232319.

rs1488432323 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:32528469 (GRCh38)
15:32820670 (GRCh37)
Canonical SPDI:: NC_000015.10:32528468:A:T
Gene:: WHAMMP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000188/21 (GnomAD)
HGVS:: NC_000015.10:g.32528469A>T, NC_000015.9:g.32820670A>T, NW_011332701.1:g.4580602A>T, NT_187660.1:g.4743054A>T, NW_012132920.1:g.2046851A>T

Select item 148842613920.

rs1488426139 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:32535115 (GRCh38)
15:32827316 (GRCh37)
Canonical SPDI:: NC_000015.10:32535114:G:A
Gene:: WHAMMP1 (Varview), LINC02256 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.32535115G>A, NC_000015.9:g.32827316G>A, NW_011332701.1:g.4587243G>A, NT_187660.1:g.4749695G>A, NW_012132920.1:g.2053473G>A

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