Links from Gene
Items: 1 to 20 of 1257
1.
rs1491439024 has merged into rs3076135 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AG>-,AGAG,AGAGAG
[Show Flanks]
- Chromosome:
- 6:79234386
(GRCh38)
6:79944103
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234379:AGAGAGAG:AGAGAG,NC_000006.12:79234379:AGAGAGAG:AGAGAGAGAG,NC_000006.12:79234379:AGAGAGAG:AGAGAGAGAGAG
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AGAGAGAGAGAG=0./0
(
ALFA)
AG=0./0
(GENOME_DK)
AG=0./0
(Korea1K)
-=0.000008/2
(TOPMED)
AG=0.03006/30
(GoNL)
AG=0.036066/139
(ALSPAC)
AG=0.037723/169
(Estonian)
AG=0.038026/141
(TWINSUK)
AG=0.06/36
(NorthernSweden)
AG=0.084465/423
(1000Genomes)
AG=0.99994/16759
(TOMMO)
- HGVS:
NC_000006.12:g.79234380AG[3], NC_000006.12:g.79234380AG[5], NC_000006.12:g.79234380AG[6], NC_000006.11:g.79944097AG[3], NC_000006.11:g.79944097AG[5], NC_000006.11:g.79944097AG[6], NG_029598.1:g.5352CT[3], NG_029598.1:g.5352CT[5], NG_029598.1:g.5352CT[6], NR_040671.1:n.573AG[3], NR_040671.1:n.573AG[5], NR_040671.1:n.573AG[6]
2.
rs1490586254 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- G>-
[Show Flanks]
- Chromosome:
- 6:79235913
(GRCh38)
6:79945630
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79235912:G:
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000008/2
(TOPMED)
- HGVS:
3.
rs1490570061 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 6:79237236
(GRCh38)
6:79946953
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79237235:T:G
- Gene:
- HMGN3-AS1 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
4.
rs1489290644 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 6:79237030
(GRCh38)
6:79946747
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79237029:C:A
- Gene:
- HMGN3-AS1 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000023/6
(TOPMED)
- HGVS:
5.
rs1488146281 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 6:79234434
(GRCh38)
6:79944151
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234433:T:G
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
6.
rs1486898833 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 6:79235795
(GRCh38)
6:79945512
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79235794:A:T
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
7.
rs1486210566 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 6:79232601
(GRCh38)
6:79942318
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79232600:G:A,NC_000006.12:79232600:G:T
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000055/1
(
ALFA)
T=0.000008/2
(TOPMED)
- HGVS:
8.
rs1484968676 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 6:79233409
(GRCh38)
6:79943126
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79233408:A:T
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
9.
rs1484951245 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 6:79237132
(GRCh38)
6:79946849
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79237131:T:G
- Gene:
- HMGN3-AS1 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency
- MAF:
G=0.000007/1
(GnomAD)
- HGVS:
10.
rs1484825668 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 6:79234124
(GRCh38)
6:79943841
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234123:T:C
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000007/1
(GnomAD)
C=0.000015/4
(TOPMED)
- HGVS:
12.
rs1484282630 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,C
[Show Flanks]
- Chromosome:
- 6:79234623
(GRCh38)
6:79944340
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234622:G:A,NC_000006.12:79234622:G:C
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,5_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
A=0.000071/1
(TOMMO)
- HGVS:
NC_000006.12:g.79234623G>A, NC_000006.12:g.79234623G>C, NC_000006.11:g.79944340G>A, NC_000006.11:g.79944340G>C, NG_029598.1:g.5116C>T, NG_029598.1:g.5116C>G, NM_004242.4:c.-63C>T, NM_004242.4:c.-63C>G, NM_004242.3:c.-63C>T, NM_004242.3:c.-63C>G, NM_138730.3:c.-63C>T, NM_138730.3:c.-63C>G, NM_138730.2:c.-63C>T, NM_138730.2:c.-63C>G, NM_001201362.2:c.-63C>T, NM_001201362.2:c.-63C>G, NM_001201362.1:c.-63C>T, NM_001201362.1:c.-63C>G, NM_001318887.2:c.-63C>T, NM_001318887.2:c.-63C>G, NM_001318887.1:c.-63C>T, NM_001318887.1:c.-63C>G, NM_001318884.2:c.-63C>T, NM_001318884.2:c.-63C>G, NM_001318884.1:c.-63C>T, NM_001318884.1:c.-63C>G, NM_001201363.2:c.-63C>T, NM_001201363.2:c.-63C>G, NM_001201363.1:c.-63C>T, NM_001201363.1:c.-63C>G, NM_001318886.2:c.-63C>T, NM_001318886.2:c.-63C>G, NM_001318886.1:c.-63C>T, NM_001318886.1:c.-63C>G, NM_001318885.2:c.-63C>T, NM_001318885.2:c.-63C>G, NM_001318885.1:c.-63C>T, NM_001318885.1:c.-63C>G, NM_001318888.2:c.-63C>T, NM_001318888.2:c.-63C>G, NM_001318888.1:c.-63C>T, NM_001318888.1:c.-63C>G, NR_040671.1:n.816G>A, NR_040671.1:n.816G>C
13.
rs1484259825 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 6:79235968
(GRCh38)
6:79945685
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79235967:T:C
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000014/2
(GnomAD)
- HGVS:
14.
rs1483989235 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 6:79233841
(GRCh38)
6:79943558
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79233840:C:T
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000021/3
(GnomAD)
T=0.000023/6
(TOPMED)
- HGVS:
15.
rs1483859115 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 6:79234523
(GRCh38)
6:79944240
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234522:A:G
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
16.
rs1483759400 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- A>-
[Show Flanks]
- Chromosome:
- 6:79231715
(GRCh38)
6:79941432
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79231714:A:
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000014/2
(GnomAD)
- HGVS:
17.
rs1483750099 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 6:79233997
(GRCh38)
6:79943714
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79233996:G:C
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
18.
rs1483534276 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>A,C
[Show Flanks]
- Chromosome:
- 6:79234640
(GRCh38)
6:79944357
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234639:T:A,NC_000006.12:79234639:T:C
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,5_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
A=0.000021/3
(GnomAD)
A=0.000023/6
(TOPMED)
- HGVS:
NC_000006.12:g.79234640T>A, NC_000006.12:g.79234640T>C, NC_000006.11:g.79944357T>A, NC_000006.11:g.79944357T>C, NG_029598.1:g.5099A>T, NG_029598.1:g.5099A>G, NM_004242.4:c.-80A>T, NM_004242.4:c.-80A>G, NM_004242.3:c.-80A>T, NM_004242.3:c.-80A>G, NM_138730.3:c.-80A>T, NM_138730.3:c.-80A>G, NM_138730.2:c.-80A>T, NM_138730.2:c.-80A>G, NM_001201362.2:c.-80A>T, NM_001201362.2:c.-80A>G, NM_001201362.1:c.-80A>T, NM_001201362.1:c.-80A>G, NM_001318887.2:c.-80A>T, NM_001318887.2:c.-80A>G, NM_001318887.1:c.-80A>T, NM_001318887.1:c.-80A>G, NM_001318884.2:c.-80A>T, NM_001318884.2:c.-80A>G, NM_001318884.1:c.-80A>T, NM_001318884.1:c.-80A>G, NM_001201363.2:c.-80A>T, NM_001201363.2:c.-80A>G, NM_001201363.1:c.-80A>T, NM_001201363.1:c.-80A>G, NM_001318886.2:c.-80A>T, NM_001318886.2:c.-80A>G, NM_001318886.1:c.-80A>T, NM_001318886.1:c.-80A>G, NM_001318885.2:c.-80A>T, NM_001318885.2:c.-80A>G, NM_001318885.1:c.-80A>T, NM_001318885.1:c.-80A>G, NM_001318888.2:c.-80A>T, NM_001318888.2:c.-80A>G, NM_001318888.1:c.-80A>T, NM_001318888.1:c.-80A>G, NR_040671.1:n.833T>A, NR_040671.1:n.833T>C
19.
rs1483332357 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 6:79234616
(GRCh38)
6:79944333
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234615:G:A
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,5_prime_UTR_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000008/2
(TOPMED)
- HGVS:
NC_000006.12:g.79234616G>A, NC_000006.11:g.79944333G>A, NG_029598.1:g.5123C>T, NM_004242.4:c.-56C>T, NM_004242.3:c.-56C>T, NM_138730.3:c.-56C>T, NM_138730.2:c.-56C>T, NM_001201362.2:c.-56C>T, NM_001201362.1:c.-56C>T, NM_001318887.2:c.-56C>T, NM_001318887.1:c.-56C>T, NM_001318884.2:c.-56C>T, NM_001318884.1:c.-56C>T, NM_001201363.2:c.-56C>T, NM_001201363.1:c.-56C>T, NM_001318886.2:c.-56C>T, NM_001318886.1:c.-56C>T, NM_001318885.2:c.-56C>T, NM_001318885.1:c.-56C>T, NM_001318888.2:c.-56C>T, NM_001318888.1:c.-56C>T, NR_040671.1:n.809G>A
20.
rs1482877144 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 6:79234852
(GRCh38)
6:79944569
(GRCh37)
- Canonical SPDI:
- NC_000006.12:79234851:C:A,NC_000006.12:79234851:C:T
- Gene:
- HMGN3 (Varview), HMGN3-AS1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
A=0.00004/1
(TOMMO)
- HGVS: